Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3625
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0060 + 3729613-3729863,3730377-3730392 29 1.4
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 1.8
06_03_0830 + 25159758-25162460 28 3.2
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 3.2
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 4.2
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 4.2
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 4.2
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 27 7.3
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 7.3
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 27 7.3
02_04_0534 + 23725051-23726253 27 7.3
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 27 9.7
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 27 9.7
01_06_1724 - 39452858-39454309 27 9.7
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 238 ANWPPGRYSALRLIVCSRLIPPIRC 164
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 217 YSALRLIVCSRLIPPIRC-SALNWATPRLR 131
Y L CS +PP+RC L W+ PR++
Sbjct: 15 YPLLAPPTCSSRLPPLRCFVGLRWSAPRIQ 44
>06_03_0830 + 25159758-25162460
Length = 900
Score = 28.3 bits (60), Expect = 3.2
Identities = 28/103 (27%), Positives = 41/103 (39%)
Frame = +1
Query: 106 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 285
W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611
Query: 286 KPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAGSTSSNV 414
PLS D + K+ S VG NS+ L + A T+SNV
Sbjct: 612 -PLSSDIVRKDASATVGLNSLELD--LNCPCDDEEAAITTSNV 651
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 181 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 360
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 361 VYDY 372
YD+
Sbjct: 262 KYDF 265
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 109 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 288
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 289 PLSID 303
P S+D
Sbjct: 214 PFSVD 218
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 78 CFARTDLSLLDECIKFKFLNRGVAQ 152
C ++ +S++DEC+K FL +AQ
Sbjct: 1964 CSSKDSVSVIDECLKLLFLFHSLAQ 1988
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 118 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 297
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 298 IDDIVKEGS 324
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 157 LNWATPRLRNLNLMHSSNRDKSVRAKQSITRFSHMICFNLQFQFPMRF 14
L++ P L LN S +K + + +I + +IC PM +
Sbjct: 316 LHYLAPHLTKLNKDQMSEIEKEAKIQMTIAKLQSLICIEAVQAAPMNY 363
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 253 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAGSTSS 408
D +++MY++EK L + + +G NS+ GT + V SP + T S
Sbjct: 243 DGDMAEMYLSEKKLRTEASFYGDQSMLGYNSVGDGTSFSAPV-SPVSSPTES 293
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +1
Query: 118 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 297
+N ++ +AS + G+ +E ESD++ ++NV+ N + G KL ++ K L
Sbjct: 81 VNEDTDDDASMNAGEGNE--ESDDDVKINVRDENGTIE----TRGKTKLKDIWNLPKGLR 134
Query: 298 I----DDIVKEGSNKVGTNSIFLG 357
I +D+ + ++ G S FLG
Sbjct: 135 IVVQCNDLNQAVGDEAGILSKFLG 158
>02_04_0534 + 23725051-23726253
Length = 400
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 428 PRVMVTLLDVLPAFGDLTP*SYTVPRKMLLVP 333
PR T LP +GDL P S TV ++ L +P
Sbjct: 77 PRTPHTYGSFLPIYGDLPPLSVTVVQETLPLP 108
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 124 LNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRI 243
L S + + SLGQ S E D + N ++NA ++ LRI
Sbjct: 791 LKSRPDNANSLGQESSKHEPDASTGTNDLIDNAVMSRLRI 830
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 187 ENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNK 330
EN N K NN V NL + ++ L +++ P++ +++EG K
Sbjct: 209 ENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK 256
>01_06_1724 - 39452858-39454309
Length = 483
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 232 WPPGRYSALRLIVCSRLIPPIRCSALNWATPRLRN 128
WPP R + L LI R PP + L+ +LR+
Sbjct: 174 WPPDRAAVLDLIARLRATPPEKIRQLHNTQSQLRD 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,207
Number of Sequences: 37544
Number of extensions: 220597
Number of successful extensions: 631
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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