Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3624
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 130 1e-30
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 30 1.5
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 30 1.5
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 30 1.5
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.2
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.2
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.2
AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine re... 28 8.2
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 130 bits (313), Expect = 1e-30
Identities = 64/149 (42%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Frame = +3
Query: 225 YLVGYMQWSVAWLIGPVILSVMRDQ-WRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 401
+ +G +S W++ +I SV + WRK +R IA A E++VI+A+L DLP+W
Sbjct: 21 FFLGKWDYSFVWVLIIIIASVTKSYLWRKRE--RRLIALRATALREREVIMAQLQDLPAW 78
Query: 402 VFFPDVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAESLANYKLSGFKFERMILGT 581
V FPD ER EWLN+++ Q+WP V Y KT + D I P V + FKF +M +G
Sbjct: 79 VQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPG-MFKNFKFTKMDMGD 137
Query: 582 IAPRVGGVKVYDKNLSRNEIIMDIDLFYA 668
I RVGG+KVY N+ R+ II+D+D+ YA
Sbjct: 138 IPCRVGGIKVYTTNVGRDRIIVDMDVAYA 166
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 198 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 302
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 198 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 302
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 198 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 302
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 419 RTSRMVEQDTPTSLAECEQLRKDFIEGPDRTG 514
+ + + E TPT L+EC +L K+F D+ G
Sbjct: 680 KNASVTEATTPTQLSECIKLVKEFQSKCDKEG 711
>Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical
protein C47D12.4 protein.
Length = 305
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 632 PREILIINLDATNPRRNGTENHTFKFKSAEFV 537
P E II L+ TN R+ +N ++FK+ EF+
Sbjct: 241 PLEKTII-LEGTNSRQRSEDNRFYRFKNCEFL 271
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 291 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 434
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 291 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 434
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine
receptor, class t protein6 protein.
Length = 355
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 165 NSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 302
N F + + F KKV LVGY WS+ + PV+ SV W
Sbjct: 138 NPNFPLEFVFRKKVFYFVLGALVGYSFWSLLF-TKPVLFSVEYSCW 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,068,634
Number of Sequences: 27780
Number of extensions: 392243
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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