Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3622
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   8.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   8.8  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.8  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 640 INFYIYRYRRYQSYNLYRLVVSNSENIAEFCLRSID 533
           + FY+Y +   +   L++ +  N   I+EF   +ID
Sbjct: 306 LTFYLYEFPNTKVSRLHKCLSDNGGQISEFLSSTID 341


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 81  RSKNSKTAASTLQTGNHVCFAINDDTTVKLYPKIKLLQKYI 203
           ++K+S ++++ LQ    + ++I D   +  Y K+K  +K+I
Sbjct: 31  QNKDSDSSSTCLQQKIEIQWSITDSLYIAKYGKLKKTKKFI 71


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 36  PANLTIRMPPPTLRPRSKNSKTAASTLQ 119
           P+N    +  PT+RP S  S+T+AS+ +
Sbjct: 58  PSNFVHCLDIPTVRPGSSMSRTSASSFR 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,923
Number of Sequences: 5004
Number of extensions: 57144
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)