Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3622
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0243 - 26639497-26641173                                         29   5.2  
09_06_0322 - 22329897-22330078,22330569-22331928                       28   9.2  
09_04_0180 + 15367737-15367755,15368874-15369739                       28   9.2  

>05_06_0243 - 26639497-26641173
          Length = 558

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/75 (20%), Positives = 31/75 (41%)
 Frame = +3

Query: 30  PEPANLTIRMPPPTLRPRSKNSKTAASTLQTGNHVCFAINDDTTVKLYPKIKLLQKYIFA 209
           P  A+++ R+     R + +  +  A     G     A++DD  + +  ++        A
Sbjct: 30  PAAASISARLRDVARRRKDRPRRCRAQVAPRGGDRISALSDDVLLLILRRLATRAALATA 89

Query: 210 YQIQKWTSLRTWLDS 254
              ++W  L  WLD+
Sbjct: 90  MLSKRWARLLRWLDT 104


>09_06_0322 - 22329897-22330078,22330569-22331928
          Length = 513

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 274 HYIDTDHHRHPSKH*PQTGAKTSVKQH 354
           HYI  D H HP    P     +S KQH
Sbjct: 159 HYIPEDTHHHPYALRPHNPLSSSSKQH 185


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 30  PEPANLTIRMPPPTLRPRS----KNSKTAASTLQTGNHVCFAINDDTTVKLY 173
           P+P    I  PPP L PRS    + S T AS   T      A++   T+ LY
Sbjct: 182 PKPIPTPIPSPPPRLIPRSFLAKRLSPTGASDAATATKTTKAMDFVQTIVLY 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,550
Number of Sequences: 37544
Number of extensions: 366669
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)