Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3614
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    31   0.14 
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   1.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   6.9  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 162 PMDEIMHAPDDTTCSEGEDDHKKEIRPNANN 254
           P+D    +P+DTT ++GED ++ E+  N NN
Sbjct: 61  PVDSHNESPNDTTINKGEDGNENEV-DNVNN 90


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 24  NRIHFYYYSNLKFYVAFQTLVIVKKTSSNVRDKLT--LSF*KIILEVIPMDEIMHAPDDT 197
           N + FY    L  Y+  Q    VK+  +   DKL+  L   + ++ V+P D ++ +  D 
Sbjct: 92  NNLDFYACIKLVNYIRSQ----VKEGKTPDLDKLSDILRSDEYMISVLPDDSVLFSLGDE 147

Query: 198 TCSEGEDDHKKEI 236
             S+ EDD+  EI
Sbjct: 148 LDSDFEDDNTLEI 160


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 192 DTTCSEGEDDHKKEIRPNANNEQDFPHQ 275
           D    + ED+H +E RP+ + ++D P +
Sbjct: 118 DNIFDDDEDEHVREKRPHDSADEDAPRR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,503
Number of Sequences: 5004
Number of extensions: 52424
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)