Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3614
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 90 1e-18
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 87 7e-18
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 87 7e-18
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 87 7e-18
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 87 7e-18
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 87 7e-18
Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical ... 29 2.1
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 29 2.1
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 29 3.7
AF043693-9|AAB97533.2| 94|Caenorhabditis elegans Hypothetical ... 28 6.4
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 89.8 bits (213), Expect = 1e-18
Identities = 49/124 (39%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Frame = +3
Query: 150 LEVIPMDEIMHAPDDTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPP---TQMEEKMR 320
LE IP++ + TT +D+ NA+ Q P + E++R
Sbjct: 3 LEQIPLESMSRR--STTDRSDFNDNASNASSNASRRPTINFQEIMEDLPHHERETGERLR 60
Query: 321 RKLQFFFMNPIEKWKAKRKFPYKFVVQVIKIVLVTFQLCLFAHNRYNHVNYTWDNRIAFS 500
R LQFFFMNP+EKWK + + PYK V+QV+KIV VT QL LFA R +HV++ D
Sbjct: 61 RHLQFFFMNPMEKWKVRHQLPYKLVLQVLKIVFVTMQLILFAEMRMSHVDFLEDTTTVMR 120
Query: 501 HLFL 512
H FL
Sbjct: 121 HRFL 124
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 407
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 408 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFL 512
KIV VT QL LFA R +HV++ D H FL
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFL 114
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 407
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 408 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFL 512
KIV VT QL LFA R +HV++ D H FL
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFL 114
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 407
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 408 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFL 512
KIV VT QL LFA R +HV++ D H FL
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFL 114
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 407
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 408 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFL 512
KIV VT QL LFA R +HV++ D H FL
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFL 114
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +3
Query: 237 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 407
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 408 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFL 512
KIV VT QL LFA R +HV++ D H FL
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFL 114
>Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical
protein F35G12.5 protein.
Length = 340
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 192 DTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPPTQMEEKMRRK 326
D C D++ + A +QDF H ST+ S P+ +EE+ R+
Sbjct: 48 DKKCILDNDENHNVLFKFAPIDQDFAHSSTNLSTPSPLEEESARE 92
>AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical
protein F58H7.5 protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 171 EIMHAPDDTTCSEGEDDHKKEIRPNA--NNEQDFPHQSTSFSPPTQMEEKMRRKLQF 335
E + +P D+ E E+D +E++ + E++ HQ F P +E+ +RR++ +
Sbjct: 98 EEVDSPQDSP-DEFEEDIAEEVKDKSASEEEEEDEHQVFQFENPRDLEDPLRRRVPY 153
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 168 DEIMHAPDDTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPPTQMEEKMRRK--LQFFF 341
+E PDD E + + KKE + + ++ + PP +E +K +FF
Sbjct: 53 EEKSKVPDDGKKQEDKKEVKKEEKKKDEKNKKSKNRKSKMKPPPDTQELANKKKFCNWFF 112
Query: 342 MNPIEKWKAKRKF 380
++ ++ K R F
Sbjct: 113 VDELDCKKLMRDF 125
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -1
Query: 245 IRSNFLFVIVFAFRTGSIIRGMHDFIHGYNF*YNFLKRQGQFVTNV 108
++S F+ +++AF+TG + + +++ G + L+R+G F+ NV
Sbjct: 142 VKSPFICDLLYAFQTGGKLYLILEYLSGGEL-FMHLEREGMFMENV 186
>AF043693-9|AAB97533.2| 94|Caenorhabditis elegans Hypothetical
protein C34B2.1 protein.
Length = 94
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 261 DFPHQSTSFSPPTQMEEK-MRRKLQFFFMNPIE 356
DF H + F+ PTQ EEK +++KL N ++
Sbjct: 62 DFGHLTAEFTAPTQNEEKPLKKKLVGILKNTLK 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,177
Number of Sequences: 27780
Number of extensions: 297007
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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