Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3610
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.54 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.2  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    27   2.2  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   3.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   5.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.8  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 353 KNNLIINLDKTKFM-QFYQRNKYINLTIYNNNNHIYETENIDFLGVK 216
           K +L  N+D+ + + QFYQ    +N   + N +H+Y+  N   +  K
Sbjct: 485 KKSLYKNVDQPQLLFQFYQSIMDLNNDCFTNTSHLYDVLNAQRISFK 531


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 543 GVPQGSVLGPLLFIIYINDFPNSIDH 466
           G PQGS++ P+L  IY++     I++
Sbjct: 420 GTPQGSIVSPILANIYLHQLDEFIEN 445


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 37  IEFPQKIIPYLRQD*TTPRYAVSKASVFK--MEDNLKSA*AEELT 165
           +EF  K IPYLR        A+ K  V     ED+LK+   E L+
Sbjct: 490 VEFEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLS 534


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 413 YIL--YEHDINSTLHSIISWLDKNNLIINLDKTK 318
           Y+L  YEHD+ + + + +S      L+I L KTK
Sbjct: 397 YVLQAYEHDLKTPIRTAVSGNLVRTLLIQLQKTK 430


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -1

Query: 287 INLTIYNNNNHIYETENIDFLGVKIDNKLDWKSHTDGLCKRVSSSAYALFKLSSILNTDA 108
           I LT   N N I E E++   G ++  K+  ++H    C R++     L   +S+   DA
Sbjct: 412 IRLTGILNTNAINEDEDLKGHGTQVYPKISAENHEHLFCLRINPMLDGL--RNSVATVDA 469

Query: 107 L 105
           L
Sbjct: 470 L 470


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 182  LYEISNLICYQFLHRGNLYFLFH 250
            +Y IS  IC +++  GN++ L H
Sbjct: 1319 VYNISTKICTKYIQFGNVFNLLH 1341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,430
Number of Sequences: 5004
Number of extensions: 60133
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)