Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3610
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    38   0.008
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    38   0.010
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    35   0.071
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    35   0.071
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = -3

Query: 552 ITYGVPQGSVLGPLLFIIYIND 487
           I+ GVPQGSV GPLLFI++IN+
Sbjct: 877 ISSGVPQGSVSGPLLFILFINN 898


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 549 TYGVPQGSVLGPLLFIIYIND 487
           T GVPQG+VL PLLF IY+ND
Sbjct: 74  TCGVPQGAVLSPLLFGIYVND 94


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 543 GVPQGSVLGPLLFIIYINDFPNSID 469
           GVPQGSV+ P LF  Y+ D P   D
Sbjct: 532 GVPQGSVISPNLFTFYLKDMPTQQD 556


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 552 ITYGVPQGSVLGPLLFIIYINDFPNSI 472
           I+ GVP+GSV GP LF+I+IN    S+
Sbjct: 53  ISSGVPKGSVSGPFLFLIFINSLLLSV 79


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 269  NNNNHIYETENIDFLGVKIDNKLDWKSHTDGLCKRVSSSAYALFKLSSILNTD 111
            ++  H Y+T +     V ID   D     +GLC+ V++    L K + +++TD
Sbjct: 947  SDQGHGYKTHSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRLRKQAKLVSTD 999


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,013
Number of Sequences: 27780
Number of extensions: 320703
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)