Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3609
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    32   0.070
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    28   1.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    28   1.5  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   6.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   6.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.0  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   8.0  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -3

Query: 276 LIPSIPIHLYSHVVFMTVLLQSC 208
           L+PSIP   +S VVF++VLLQ+C
Sbjct: 2   LLPSIPSCSFSFVVFVSVLLQTC 24


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 381 NQDFCFIKSKSGLAWSTAPTSGPGFRNTSYFHLSPYRRGPFGLWIIQFS 527
           N  F F   K    W  AP   P + NT+  +   Y   PF  W+ + S
Sbjct: 117 NTQFQFTSRKD--LWD-APLYSPSYNNTNLLYNFSYNANPFEFWVTRKS 162


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 351 SIERSGTSRLNQDFCFIKS-KSGLAWSTAPTSGPGFRNTSYFHLSPYRRGPF 503
           S E+    +LN++    +S  S L +S  P S   F   S FH+S  +R PF
Sbjct: 490 SCEKVLCEKLNRNCMNAQSLMSSLGFSVPPMSYAEFLIISSFHISAVKRSPF 541


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 627 HDFIFTIASPTTGIESIHTTWSHCV 701
           H+ +FT  S   G+ SI + W + V
Sbjct: 685 HELVFTTKSYVRGVSSIRSNWLNAV 709


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 513 STIRTALFCMETNESSW 463
           S+IR A+FC   N SSW
Sbjct: 11  SSIRNAVFCKFVNASSW 27


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 638 NEIMGSSQTIPQSTPHRTYGTRENRSPSEDLDVPND 531
           ++  GSS+   QS+P R YG  ++R  S++  +  D
Sbjct: 852 SDFPGSSRYRDQSSPIRFYGKADSRPVSQEAILSQD 887


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 17  QNLPPDRKRDGLCLWVNLFAEPFVASAGFDENDARCLGY 133
           + LPP+   + L L+ N F +   + A  D     C GY
Sbjct: 301 RGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,576
Number of Sequences: 5004
Number of extensions: 68063
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)