Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3608
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.28 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   2.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   4.5  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   4.5  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.0  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.9  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 19  HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 174
           HR+DI++  Q  +      L+   K Q  +N+ ++ K + EK + L  DN++
Sbjct: 59  HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 19  HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 132
           HR++  ++  ++ E++  +S L++L+  Q+D N   N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 49   FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
            F+ L+++  LKS+ +TQ+D    + +  M+  L     D+L  S+E
Sbjct: 3741 FKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLF--DSLLSSIE 3784


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 LKRLECDNLTDSVEIYGIHDNRLNN 219
           LK LECD L  S+E+   H  + ++
Sbjct: 3   LKCLECDKLLSSIEMAEFHSTKTSH 27


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 108 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWC 7
           F   RF+Q+  +R   +   L + N I PM+++C
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC 619


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 106 ENVSDNIKSMSEKLKRLECDN 168
           ENV  + K + EK+K LE DN
Sbjct: 99  ENVLASYKHLCEKIKYLEADN 119


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 70   SLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
            S +KS+ K Q+    S ++       +   C N TDSVE
Sbjct: 1673 SKVKSINKDQVFNAFSPDVSERPPLFEVASCSNETDSVE 1711


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 310 HIVAKLCDATRAKEWQTKSRERRLKNFNLNINYDG 414
           +++ K C ++ A E+  K+ + +L   N+NI+  G
Sbjct: 701 NVLVKSCQSSPAGEFSRKTSKLKLHLSNINISSSG 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,625
Number of Sequences: 5004
Number of extensions: 26735
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)