Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3608
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   2.6  
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    29   2.6  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   7.9  
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742...    27   7.9  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 304 KNHIVAK--LCDATRAKEWQTKSRERR 378
           KNH++ K  LCD T   EW  + +E++
Sbjct: 443 KNHVIKKFELCDFTPIYEWHLREKEKK 469


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 157 ECDNLTDSVEIYGIHDNRLN-NKKIRNYYLKKICILLDLNFKHVI 288
           +CD    SV +YG  D+ L  N K+ N  + K C  + + FKHV+
Sbjct: 358 DCD-ARQSVYVYGCKDSVLQVNGKVNNITVDK-CTKVGIVFKHVV 400


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 277  KHVIESSFDK---NHIVAKLCDATRAKEWQTKSRERRLKNFNLNINYDGPVKI 426
            K V + SF+K   +HI  +  +    KE  + S E+ L + N    +DG +K+
Sbjct: 1445 KEVNDHSFEKEVGDHICLQAQEDHNEKELDSHSTEKELGDHNKTEEFDGNMKV 1497


>07_03_0532 +
           19171290-19171394,19173122-19173302,19173761-19174245,
           19174877-19176283,19176413-19176628
          Length = 797

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 28  DIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRL 156
           DI  MD F ++  ++   S  K++ ++  S  +  + EK+KRL
Sbjct: 314 DIGMMDDFLEMEKIASANSPSKSEAEDAASVQLVKLEEKIKRL 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,790,543
Number of Sequences: 37544
Number of extensions: 152073
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)