Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3607
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p pro...   151   5e-37
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...   151   5e-37
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...   143   1e-34
AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p pro...    29   5.0  
AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA...    29   5.0  

>AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p protein.
          Length = 711

 Score =  151 bits (367), Expect = 5e-37
 Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
 Frame = -3

Query: 596  GELGTGPPLSSTAVCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLT 417
            G+   G  L  T + K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ 
Sbjct: 526  GKPSPGLELIRTLI-KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIIN 584

Query: 416  ELTCRVCNHXXXXXXXXXXXXDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRTMAYT 243
            E+ C+ CNH              +   P  LC  C  AYDN+EIE R+++ + ++ M+Y 
Sbjct: 585  EVICKACNHCRDLDLCKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYV 644

Query: 242  LQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            LQDL CSRC ++KRENL+  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 645  LQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 703


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
            protein.
          Length = 2236

 Score =  151 bits (367), Expect = 5e-37
 Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
 Frame = -3

Query: 596  GELGTGPPLSSTAVCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLT 417
            G+   G  L  T + K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ 
Sbjct: 2051 GKPSPGLELIRTLI-KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIIN 2109

Query: 416  ELTCRVCNHXXXXXXXXXXXXDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRTMAYT 243
            E+ C+ CNH              +   P  LC  C  AYDN+EIE R+++ + ++ M+Y 
Sbjct: 2110 EVICKACNHCRDLDLCKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYV 2169

Query: 242  LQDLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            LQDL CSRC ++KRENL+  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 2170 LQDLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 2228


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
            epsilon protein.
          Length = 2220

 Score =  143 bits (347), Expect = 1e-34
 Identities = 68/177 (38%), Positives = 107/177 (60%)
 Frame = -3

Query: 596  GELGTGPPLSSTAVCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLT 417
            G+   G  L  T + K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ 
Sbjct: 2043 GKPSPGLELIRTLI-KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIIN 2101

Query: 416  ELTCRVCNHXXXXXXXXXXXXDTERPACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQ 237
            E+ C+ CNH              ++   +   C  AYDN+EIE R+++ + ++ M+Y LQ
Sbjct: 2102 EVICKACNHCRDLDLCK------DKHRAMKDGCYVAYDNEEIEMRMLDALQRKMMSYVLQ 2155

Query: 236  DLICSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            DL CSRC ++KRENL+  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 2156 DLRCSRCSEIKRENLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 2212


>AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 608 DSL*GELGTGPPLSSTAVCKVFSL--DPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPC 435
           D L  +    PP SS  + K++ L  D T D  + L  + ++ L+G     +A   RE  
Sbjct: 147 DQLKSQFANCPP-SSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNACVAREDA 205

Query: 434 AACVLTEL 411
             C++T L
Sbjct: 206 MKCIVTAL 213


>AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 608 DSL*GELGTGPPLSSTAVCKVFSL--DPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPC 435
           D L  +    PP SS  + K++ L  D T D  + L  + ++ L+G     +A   RE  
Sbjct: 147 DQLKSQFANCPP-SSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNACVAREDA 205

Query: 434 AACVLTEL 411
             C++T L
Sbjct: 206 MKCIVTAL 213


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,029,120
Number of Sequences: 53049
Number of extensions: 492505
Number of successful extensions: 1593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)