Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3604
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    31   0.95 
11_04_0026 - 12446179-12446399,12446604-12447303                       29   5.1  
04_04_0881 + 29055724-29059197                                         29   5.1  
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     28   8.9  

>05_02_0115 -
           6758540-6758771,6759417-6759524,6759670-6759840,
           6759967-6760077,6760562-6760663,6761139-6761366,
           6761568-6761696,6761753-6761869,6761955-6762301,
           6762377-6762931,6763104-6763182,6763429-6763595,
           6763857-6764075,6764956-6765139,6765175-6765371,
           6765717-6766035,6766379-6766538,6767642-6767794,
           6767911-6768013
          Length = 1226

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +3

Query: 51  SRILVPVRESLQYRLNSVITLYYVFVFYCMMLFNHSENV 167
           SR LVP+ E+ Q   N VIT   V VF  M +   SENV
Sbjct: 65  SRDLVPIIENYQADRNLVITAVKVLVFLTMPVEPSSENV 103


>11_04_0026 - 12446179-12446399,12446604-12447303
          Length = 306

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 158 RKRVKYLIH*NNRYPPAGFEPWNNRVTRYE 247
           R+   Y+ + NNRY P G E WN     Y+
Sbjct: 104 REEAMYIGNNNNRYRPQGGEGWNQPCPYYQ 133


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 150 NHSENVLSI*FIRTIGTRLRGLNPGIIASLDTSTSYLYFWRIGDLIQST 296
           N S +  S+ F+     RLRG  P   ASL T     Y W  G+L++ T
Sbjct: 192 NVSASATSLQFLNLAVNRLRGTVP---ASLGTLQDLHYLWLDGNLLEGT 237


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 665 DSGFMGMVPRAVGSVLAMTLTVITYRQMGHSL 570
           ++   G++P A+GS+  + + V+ Y Q+  SL
Sbjct: 207 NNSLSGLIPTAIGSLSMLQVLVLQYNQLSGSL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,809
Number of Sequences: 37544
Number of extensions: 359562
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)