Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3601
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0194 + 2130274-2131725                                           30   1.1  
10_01_0192 + 2125986-2127294,2127463-2127506                           29   2.0  
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           28   4.6  

>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 251 QSYYVSLNIYYNTIISLKTYRFPKSSGW*TIKTLILNIHTDIYTKYLYKSLA 96
           + +Y SL         +   RF KS    T+K ++L+IH+     YL+K+LA
Sbjct: 262 EEFYTSLAQMNEGSKVITISRFRKSEKLGTVKPILLDIHSHEELTYLFKTLA 313


>10_01_0192 + 2125986-2127294,2127463-2127506
          Length = 450

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 251 QSYYVSLNIYYNTIISLKTYRFPKSSGW*TIKTLILNIHTDIYTKYLYKSLA 96
           + +Y SL         +   RF KS    T+K + L+IH+     YL+K+LA
Sbjct: 260 EEFYTSLTQMNQGSKVITISRFRKSEKLGTVKPIALDIHSYEELSYLFKTLA 311


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 191 RFPKSSGW*TIKTLILNIHTDIYTKYLYKSLA 96
           R  KS    T+K + LN H+D    YL+K LA
Sbjct: 671 RLRKSEKLGTVKPMFLNNHSDEELSYLFKMLA 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,987,239
Number of Sequences: 37544
Number of extensions: 183535
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)