Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3601
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical
           protein F56F11.2 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 278 TKLKLLQHDQSYYVSLNIYYNTIISLKTYRFPKSSGW*TIKTLILNIHTD 129
           T++  L   + ++V L +Y   I+ +K+ +  +  GW   K L+ + H D
Sbjct: 302 TRMFYLIASKEHHVFLGVYDTAIVHIKSPKLEEIVGWRMQKMLMRDGHKD 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,906,912
Number of Sequences: 27780
Number of extensions: 188709
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)