Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3600
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.095
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.89
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 29 0.89
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.2
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.1
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 2.7
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 27 3.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 3.6
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 4.7
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 26 6.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 8.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.3
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.9 bits (69), Expect = 0.095
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 93 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDH--RSRLTALPGPTARNFTASSRRN 266
S S P+T+ + S + SS S +S S ++ PT+ + T SS +
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295
Query: 267 SSSQPTTGSSTL 302
SSS PT+ SST+
Sbjct: 296 SSSSPTSTSSTI 307
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 343 TTGDTHAAFKLSLDS-PQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKNDT 519
++ T + LS S P TSSS+ T ++ S S ASSS+ +IS+ ++ + T
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 520 TFS 528
+ S
Sbjct: 285 STS 287
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.89
Identities = 26/97 (26%), Positives = 43/97 (44%)
Frame = +3
Query: 93 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSS 272
S+S T TT P+ S SS S +S S ++ ++ + ++SS +SS
Sbjct: 145 SSSSTTTTTSPSSS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 273 SQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSR 383
S ++ SS+ V SS+H + S + SR
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 697 SSHRAGDICSVDRRSECCCSELVYMRFILKMS*ARFRHLSI 575
+S D+C+V R CC+ +++ L F HL I
Sbjct: 442 TSSSNADLCNVSRAGGGCCTAAAFIKCFLAQKDLSFAHLDI 482
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 105 TPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 284
T +T+ + I SS S P + + T++P P T+S+ NSS PT
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS--TSSTDTNSSPLPT 224
Query: 285 TGSSTLGVTHLRRGSSAHM 341
T +S T + G S+ +
Sbjct: 225 TSTSCTTSTSIPTGGSSSL 243
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 219 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQSRLTADF 398
LP P+A T+S N SS T S + H S + RH R + ++R
Sbjct: 91 LPQPSALALTSSKAANRSSTNTEKDSR-SIAHSTSRSRSTSPANRHRRKEKERTRSNHRH 149
Query: 399 EQHWRH 416
H RH
Sbjct: 150 GSHRRH 155
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 116 HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 223
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = +1
Query: 163 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPD 291
P R+ N+ + + P+ + A + HH +++ +PD
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPD 719
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +1
Query: 247 LPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAA 426
L H +HR+P+P +R + +L + T+ A K + PQ S +
Sbjct: 120 LLRHQQKIHRNPQPRRRRRSTTALPNPSLSNVSVSTTNLASKPVISLPQADSIDKFRYPK 179
Query: 427 FKLSLDSPQASSS 465
+L + A++S
Sbjct: 180 LHAALQAQLANNS 192
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 86 ESEGCVFTSRRRSPVLGVLTTKGKI 12
ESE + TS R+P LG+ TT ++
Sbjct: 1603 ESEHSILTSTTRTPSLGIYTTDAQL 1627
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 76 PSDSSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSLPH 255
P+ S L P+ S H+ D P S R+ +RT++ S +L +RH
Sbjct: 207 PTKSIYDQNGLTTPRPIGSDDLTHMYD--PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRS 264
Query: 256 HAATVHRSPR 285
+ H++PR
Sbjct: 265 VSLLQHKTPR 274
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 85 SSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSL 249
S + + S S + K I+ A H++ NRT DSP +V T L
Sbjct: 295 SHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSPLGIVEDETTIL 349
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 162 SHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSS 296
S KPA+ + +T T N + + N+ S PTTG S
Sbjct: 227 SFGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFS 271
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.3
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 87 IFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRN 266
+ S+ T +P S +RH S+ +KPA+ + + LP + + SR N
Sbjct: 96 VVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAA-VSPNPAAHHAELPSGSVPPSASVSRAN 154
Query: 267 SSSQPTTGSSTLGVTHLRRGSSAHM 341
S++ TT GV ++ H+
Sbjct: 155 STA--TTTPHKAGVVSNPAAANVHV 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,118
Number of Sequences: 5004
Number of extensions: 60909
Number of successful extensions: 303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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