Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3600
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    30   1.9  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    29   3.4  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    29   3.4  
AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek (dictyo...    29   4.4  
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos...    29   4.4  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    28   7.8  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   7.8  

>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +3

Query: 84  FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 263
           F  +   T  +T+P+ S +  +   SS S  +  P     S LT+ P P++   + +   
Sbjct: 450 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509

Query: 264 NSSSQPTTGSSTLGVTHLRRGSS 332
            ++  P    ST  +     G++
Sbjct: 510 LTTPSPNPSQSTSSLESSTSGAT 532


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +3

Query: 84  FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 263
           F  +   T  +T+P+ S +  +   SS S  +  P     S LT+ P P++   + +   
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716

Query: 264 NSSSQPTTGSSTLGVTHLRRGSS 332
            ++  P    ST  +     G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +3

Query: 84  FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRR 263
           F  +   T  +T+P+ S +  +   SS S  +  P     S LT+ P P++   + +   
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716

Query: 264 NSSSQPTTGSSTLGVTHLRRGSS 332
            ++  P    ST  +     G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739


>U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical
           protein F23G4.1 protein.
          Length = 184

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 447 TAGFEQHWPLQANLSTDNAN*K*HDLQSRRGVMWRVAIIRRKIIDRCLNLAYDIFK--IK 620
           T+ F  HW     +  +  N K HDL   RG+M  V I ++ I DR     Y +F   +K
Sbjct: 27  TSLFTDHW-----VDVEVKNPKGHDLYLHRGLMQWVCINQKDISDRNCIAKYPLFPGWLK 81

Query: 621 RIYT 632
            ++T
Sbjct: 82  SVFT 85


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 164 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 337
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 164 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 337
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 168  SKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT---TGSSTLGVTHLRRGSS 332
            S  AS   Q   S  TA PG +    T +S + SSS  T   TGS+T+  T + +GSS
Sbjct: 925  STSASSSTQPIASSTTANPGSSTSGPTIASTQGSSSTQTNSNTGSTTVATT-VTQGSS 981



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 99  SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 278
           S T +    + SQ+ +    S  S           S +T  P  ++R+   +S+ +SS+Q
Sbjct: 682 SSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRS--TASQGSSSAQ 739

Query: 279 PTTGSSTLGVT 311
           P   SST+G T
Sbjct: 740 PIASSSTMGST 750



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 114 TTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTA-SSRRNSSSQPTTG 290
           TT P  S        SS ++P +       +  ++ P PTA + +  SS   +SS  T G
Sbjct: 720 TTQPPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVG 779

Query: 291 SSTLGVTHLRRGSS 332
           SST+G T     SS
Sbjct: 780 SSTMGSTQSSLPSS 793


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 334 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKN 513
           H  T   + ++   + + P TSS+      A  +S+ S Q SSS     L+S+    IKN
Sbjct: 56  HPITPSASTSSATSATEEPATSSAPQLASLA-PMSMSSEQPSSSFSSASLLSSSYETIKN 114

Query: 514 DTTFS 528
           +  FS
Sbjct: 115 EPEFS 119


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 334 HTWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKN 513
           H  T   + ++   + + P TSS+      A  +S+ S Q SSS     L+S+    IKN
Sbjct: 56  HPITPSASTSSATSATEEPATSSAPQLASLA-PMSMSSEQPSSSFSSASLLSSSYETIKN 114

Query: 514 DTTFS 528
           +  FS
Sbjct: 115 EPEFS 119


>AF016448-10|ABR92607.1|  849|Caenorhabditis elegans Smek
           (dictyostelium suppressorof mek null) homolog protein 1,
           isoform b protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 159 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 284
           +S   P+  P      R ++ PGP+  +   SS+ N  S PT
Sbjct: 690 NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 731


>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
            (dictyostelium suppressorof mek null) homolog protein 1,
            isoform a protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 159  SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPT 284
            +S   P+  P      R ++ PGP+  +   SS+ N  S PT
Sbjct: 926  NSDRSPSRTPSPASSPRASSSPGPSRDDEVTSSQNNKESSPT 967


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 99  SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 278
           S +PA   PA     A    S      + PQQ   +  T L       FTA S  NS++ 
Sbjct: 21  SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80

Query: 279 PTTGSSTL 302
            TT ++T+
Sbjct: 81  LTTSTATI 88


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 99  SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQ 278
           S +PA   PA     A    S      + PQQ   +  T L       FTA S  NS++ 
Sbjct: 21  SNSPALACPAPIFAPAPQRASPWPAALASPQQTTFTSPTGLSSSGPSAFTAVSPTNSANS 80

Query: 279 PTTGSSTL 302
            TT ++T+
Sbjct: 81  LTTSTATI 88


>AF016684-5|AAB66207.2|  297|Caenorhabditis elegans Hypothetical
           protein F45C12.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 339 MDYWRHARSIQAQSRLTADFE 401
           +D W+ AR+++A S++T  FE
Sbjct: 252 LDQWKRARTLRAHSKMTVPFE 272


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 55  RRDVNTQPSDSSSAHQELRL---PQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPR 219
           ++D      D S + +EL +   PQ+P  RR   +++   TA + R   +  A++ PR
Sbjct: 817 KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKLEASEDPR 874


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 55  RRDVNTQPSDSSSAHQELRL---PQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPR 219
           ++D      D S + +EL +   PQ+P  RR   +++   TA + R   +  A++ PR
Sbjct: 817 KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRRKGRKLEASEDPR 874


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 614 LENVVSEIQASVNYLASYDGYPPHHSPPRLKVVSFLI 504
           + +++S IQ + NY    D   PH+ PPR  V  F +
Sbjct: 153 IPSLLSLIQGTSNYWCD-DNKTPHYYPPRFSVSMFFL 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,038
Number of Sequences: 27780
Number of extensions: 376403
Number of successful extensions: 1489
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)