Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3598
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    37   0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    36   0.006
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    32   0.073
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.13 
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    31   0.22 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.51 
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   2.7  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   6.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   8.4  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 164 CYRCGRGGHWSKECPKALGPDRNG 235
           CYRCG+ GHW + CP    P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 139
           + YGFVH D+    N AI+ +NGM+++ + + V    SR R+R
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR-RER 249



 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 139
           + +GFV      + N A+ E+N  M+ G+P+ V L+  +  +R
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRR 446


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   DIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
           ++ R YGFV      D   A+ E+ G +   +P++V L+T +
Sbjct: 225 NVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 128 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 205
           VR  P   +P Q   CY+CGR GH +++C
Sbjct: 70  VRDCPSSPNPRQGAECYKCGRVGHIARDC 98



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 152 DPEQ---CYRCGRGGHWSKECPKALGPDRNGFRDRAFGR 259
           +P+Q   CY CG  GH  ++CP +  P R G      GR
Sbjct: 53  EPQQEKTCYACGTAGHLVRDCPSSPNP-RQGAECYKCGR 90



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 161 QCYRCGRGGHWSKECPK 211
           +CY CG  GH ++EC K
Sbjct: 18  RCYNCGENGHQARECTK 34



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 161 QCYRCGRGGHWSKECPKA 214
           +CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 133
           R YGFV   +  +   A+  + G +  G+P+++ +++ + R
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 133
           R YGFV      D   A KEL    + G+ +++  +T R R
Sbjct: 46  RGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKR 86



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 17  YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
           + FV +       +A+  LNG  +DG+P+ V  + S+
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 133
           R +GFV    +     A +E NG  +  +P+K+  +TS V+
Sbjct: 70  RGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVK 110


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 112
           R Y FV    T D + A+ E    ++DG+ ++++
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIE 154


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 139 PLPDTTRRQLHLHG-LSVDHHTVQLFD 62
           PLPD T R+LHL+  L    H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 164 CYRCGRGGHWSKECPKAL 217
           C+ C   GH SK+CP  L
Sbjct: 89  CHNCKGNGHISKDCPHVL 106


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 17  YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
           +GFV          A+  +NG ++DG  ++++LS
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 218  PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSWA 96
            P P+ TP    P+  SG+ +   P PA +    S  APS A
Sbjct: 1044 PIPTSTPPV--PKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 123 LVDNCTFMGCPSTIIPFNSLIASFTSPVASKCT 25
           +VD+ T     S++IP +S + + +S VAS  T
Sbjct: 113 VVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 109
           + +G V  +   D   +I++LNG    G+P+++
Sbjct: 320 KGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 14  NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
           NYGFV      D   A+    G  V GQ + +++S
Sbjct: 398 NYGFVQFFTNEDCARALNAEQGNFVRGQKLHLEIS 432


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 11  RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
           R +GFV      D + AI+E+NG  V    + V+ +  R
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,123
Number of Sequences: 5004
Number of extensions: 49322
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)