Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3598
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 65 6e-11
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 65 6e-11
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.007
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 38 0.007
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 36 0.039
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.039
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.039
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.039
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 35 0.052
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 35 0.068
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 35 0.068
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 35 0.068
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.091
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 34 0.12
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 34 0.12
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 33 0.16
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 33 0.16
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 33 0.16
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.28
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.28
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.37
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 32 0.37
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 32 0.48
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 32 0.48
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.48
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.48
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 32 0.48
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 32 0.48
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.48
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 31 0.64
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 31 0.64
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 31 0.84
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 0.84
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 31 0.84
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 31 1.1
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 1.5
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 30 1.9
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 30 1.9
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 30 1.9
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 30 1.9
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.6
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 29 2.6
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 2.6
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 2.6
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 2.6
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 2.6
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 2.6
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 2.6
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 29 3.4
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 29 3.4
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 29 3.4
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 29 3.4
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 4.5
AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical ... 29 4.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.5
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 29 4.5
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 5.9
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 28 5.9
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 28 5.9
U41270-4|ABC71847.1| 266|Caenorhabditis elegans Hypothetical pr... 28 5.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 28 5.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 5.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 5.9
AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical ... 28 5.9
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 28 5.9
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 28 5.9
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 28 5.9
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.9
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 28 7.9
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 7.9
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 28 7.9
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 28 7.9
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 7.9
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 7.9
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 28 7.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 7.9
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/70 (41%), Positives = 45/70 (64%)
Frame = +2
Query: 2 DIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGR 181
DIV+NY FVH++ DV+ I L G +DG+ + ++ STS++R PGM P +C+RC
Sbjct: 33 DIVKNYAFVHIEED-DVDPIITRLTGYTIDGKVVNIKKSTSKLRPTPGM--PNRCFRCQS 89
Query: 182 GGHWSKECPK 211
H + +CP+
Sbjct: 90 DEHRTPQCPQ 99
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/70 (41%), Positives = 45/70 (64%)
Frame = +2
Query: 2 DIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGR 181
DIV+NY FVH++ DV+ I L G +DG+ + ++ STS++R PGM P +C+RC
Sbjct: 33 DIVKNYAFVHIEED-DVDPIITRLTGYTIDGKVVNIKKSTSKLRPTPGM--PNRCFRCQS 89
Query: 182 GGHWSKECPK 211
H + +CP+
Sbjct: 90 DEHRTPQCPQ 99
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/82 (32%), Positives = 36/82 (43%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWS 196
+ FV D D DA++ L+G + G +V+LST + R G G GRGG
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRRGGGGRGGGFG----GRGGGGR 96
Query: 197 KECPKALGPDRNGFRDRAFGRD 262
P R+ R R GRD
Sbjct: 97 DRSPYRGDRGRSRSRSRDRGRD 118
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNG 235
QR G G CY CG GH+S++CP A +G
Sbjct: 59 QRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSG 92
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 137 RPGMGDPEQCYRCGRGGHWSKECPK 211
R G G CY C GH+S++CPK
Sbjct: 28 RRGGGGGSTCYNCQETGHFSRDCPK 52
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 158 EQCYRCGRGGHWSKECPKA 214
++CY CGR GH S+EC ++
Sbjct: 107 QKCYNCGRSGHISRECTES 125
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 122 SRVRQRPGMGDPEQCYRCGRGGHWSKECP 208
SR G + ++CY+C GH S++CP
Sbjct: 119 SRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 164 CYRCGRGGHWSKECPKALGPDRNGFRDRAFGRDXXXXXXXXXFLRD 301
CY+C + GH S+ CP G G R G F RD
Sbjct: 6 CYKCQQPGHISRNCPN--GESDGGRRGGGGGSTCYNCQETGHFSRD 49
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 137 RPGMGDPEQCYRCGRGGHWSKECPKALG-PDRNG 235
R G G P C+ C GH S+ CPK +G D +G
Sbjct: 161 RRGRGGPGHCFHCQEHGHISRMCPKKVGETDEHG 194
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ----CYRCG 178
+ YGFVH + +AI+++NGM++ G+ + V R ++ +G+ + Y
Sbjct: 160 KGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKN 219
Query: 179 RGGHWSKE 202
G H++KE
Sbjct: 220 FGDHYNKE 227
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ----CYRCG 178
+ YGFVH + +AI+++NGM++ G+ + V R ++ +G+ + Y
Sbjct: 97 KGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKN 156
Query: 179 RGGHWSKE 202
G H++KE
Sbjct: 157 FGDHYNKE 164
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ----CYRCG 178
+ YGFVH + +AI+++NGM++ G+ + V R ++ +G+ + Y
Sbjct: 160 KGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKN 219
Query: 179 RGGHWSKE 202
G H++KE
Sbjct: 220 FGDHYNKE 227
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 230 CGRGP-APSGTPWTSGPRGHSGSTAR-GRPCPAAAGHDSSTTA 108
CG GP PSG P T G G+ GS G P A G +S T A
Sbjct: 138 CGVGPPGPSGAPGTDGNPGNDGSPGNPGTPGQDAVGDESPTAA 180
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 256
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 238
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 256
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 238
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGFRDRAFG 256
+P CY C + GH S++CP+ P RNGF + G
Sbjct: 280 EPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSG 316
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGP--DRNGF 238
+P CY C + GH S++CP+ P RNGF
Sbjct: 394 EPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 472 PRGCFNCGEQGHRSNECPNPAKP 494
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPA 138
P P+G GP GH GS+ GRP PA
Sbjct: 223 PGPAGPRGAPGPAGHPGSSGGGRPGPA 249
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -3
Query: 227 GRGPAPS-GTPWTSGPRGHSGSTAR----GRPCPAAAGHDSSTTAP 105
G G AP G P GPRG G++ R G+P A G+ AP
Sbjct: 178 GGGAAPRPGPPGPKGPRGAPGNSGRAGAPGQPGNDAHGYGGGVGAP 223
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 139
+ +GFV + D + A E NG ++G+ ++V L+T RV +
Sbjct: 21 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNK 63
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 139
+ +GFV + D + A E NG ++G+ ++V L+T RV +
Sbjct: 139 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNK 181
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR 139
+ +GFV + D + A E NG ++G+ ++V L+T RV +
Sbjct: 139 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNK 181
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMG 151
+ FV D D DA++ L+G + G +V+LST + R G G
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRRGGGGRG 85
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMG 151
+ FV D D DA++ L+G + G +V+LST + R G G
Sbjct: 41 FAFVEYDDVRDAEDAVRALDGSRICGVRARVELSTGQRRGGGGRG 85
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
R YG+V D D +IK ++G +DG + V+++ R
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGR 213
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECP 208
+R M E C RC GHW ECP
Sbjct: 657 ERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH SKEC K P
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVP 591
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECP 208
+R M E C RC GHW ECP
Sbjct: 657 ERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH SKEC K P
Sbjct: 569 PRGCHNCGEEGHISKECDKPKVP 591
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 187
+GFV D D DA+ +LNG + G+ + + S + R G GD GRGG
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS----KPRGGGGDRGGFGGGGRGG 90
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 187
+GFV D D DA+ +LNG + G+ + + S + R G GD GRGG
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS----KPRGGGGDRGGFGGGGRGG 90
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 187
+GFV D D DA+ +LNG + G+ + + S + R G GD GRGG
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS----KPRGGGGDRGGFGGGGRGG 90
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 131 RQRPGMGDPEQCYRCGRGGHWSKECPKAL 217
R+RP P QC+ CG GH S CPK +
Sbjct: 603 RERP----PPQCFTCGEMGHISTYCPKRI 627
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +2
Query: 131 RQRPGM--GDPEQ---CYRCGRGGHWSKECPKAL 217
R++PG+ G P C RC + GHW K CP L
Sbjct: 142 RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCPMKL 175
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAA-AGHDSSTTAP 105
P P+G P +GP G+ G+ G P PA G + AP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTA-------RGRPCPAA-AGHDSSTTAP 105
GPA P+G P GP G+ GS A G P PA AG+D + AP
Sbjct: 156 GPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAP 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSSTTAP 105
GP P+G P +GP G+ G+ A G P A P
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGD 154
+ YGFVH + AI+++NGM++ + + V R ++ +G+
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGE 232
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGD 154
+ YGFVH + AI+++NGM++ + + V R ++ +G+
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGE 232
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAA-AGHDSSTTAP 105
P P+G P +GP G+ G+ G P PA G + AP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTA-------RGRPCPAA-AGHDSSTTAP 105
GPA P+G P GP G+ GS A G P PA AG+D + AP
Sbjct: 156 GPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAP 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSSTTAP 105
GP P+G P +GP G+ G+ A G P A P
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 256
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 256
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAA-AGHDSSTTAP 105
P P+G P +GP G+ G+ G P PA G + AP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTA-------RGRPCPAA-AGHDSSTTAP 105
GPA P+G P GP G+ GS A G P PA AG+D + AP
Sbjct: 156 GPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAP 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSSTTAP 105
GP P+G P +GP G+ G+ A G P A P
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAA-AGHDSSTTAP 105
P P+G P +GP G+ G+ G P PA G + AP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTA-------RGRPCPAA-AGHDSSTTAP 105
GPA P+G P GP G+ GS A G P PA AG+D + AP
Sbjct: 156 GPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAP 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSSTTAP 105
GP P+G P +GP G+ G+ A G P A P
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEP 220
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 PEQCYRCGRGGHWSKECPKALGP 223
P C+ CG GH S ECP P
Sbjct: 261 PRGCFNCGEQGHRSNECPNPAKP 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 152 DPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 256
+P CY C + GH S+EC + P R G R FG
Sbjct: 181 EPRVCYNCQQPGHTSRECTEERKP-REG-RTGGFG 213
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 242 RGNRCGRGPAPSGTPWTSGPRGHSGSTARGRP-CPAAAGHD 123
+G CG G + +G P + GP G GS GRP P G D
Sbjct: 109 QGGCCGCGTSAAGPPGSPGPDGQEGS--NGRPGAPGTNGPD 147
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 104 KVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKA 214
+V + R G P CY+C GH SK+CP++
Sbjct: 293 QVDADDKKKDSRKGNYRPPYCYKCKVVGHVSKDCPQS 329
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Frame = +2
Query: 131 RQRPGM--GDPEQ---CYRCGRGGHWSKECP 208
R++PG+ G P C RC + GHW K CP
Sbjct: 142 RRQPGIMTGPPPPTYTCNRCSQPGHWYKNCP 172
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 239 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
GN+ GP P G P +GP G +G+ G P P A G P
Sbjct: 176 GNKGPAGPPGPGGKPGPAGPPGENGN--NGEPQPGAPGEPGQPGQP 219
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = -3
Query: 242 RGNRCGRG-PAPSGTPWTSGPRG-------HSGSTARGRP-CPAAAGHDSSTTAP 105
RG + RG P PSG P GP G GS G+P P A GH P
Sbjct: 202 RGGQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQPGAPGAPGHPGQAGTP 256
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
P P G P GP G SG A G P + G D AP
Sbjct: 114 PCPQGPPGPPGPPGPSGD-AGGNGNPGSPGQDGQPGAP 150
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
P P G P GP G SG A G P + G D AP
Sbjct: 147 PCPQGPPGPPGPPGPSGD-AGGNGNPGSPGQDGQPGAP 183
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 339 TMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEE 440
T+ VHG I+H C+SDA + ++ +N +D+++
Sbjct: 785 TVNVHGKIVHSACASDAARSLDNSSFFNDSDIKK 818
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
R + F+ G A++++NG +G+P++V L+
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 227 GRG-PAPSGTPWTSGPRGHSGSTARGRPCPAAAG 129
GRG P PSG P + GP G G G P AG
Sbjct: 202 GRGLPGPSGAPGSQGPPGAPGQPGSGN-APGPAG 234
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 227 GRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSS 117
G P P+G P +GP G G + P A G+D +
Sbjct: 227 GNAPGPAGPPGPAGPNGQPGHPGQDGQ-PGAPGNDGT 262
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 236 NRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
N+C GP P G+P + GP G G G+P GHDS P
Sbjct: 124 NKCHAGPPGPKGSPGSPGPNGVPG--VDGKP-----GHDSLDVTP 161
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGSTARGRPCP 141
GP P+G P GP G GS +P P
Sbjct: 250 GPGPAGPPGPPGPPGQDGSGGAAQPGP 276
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRP 142
+GFV D AI +NG + + +KVQL R RP
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRNESRP 513
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSSTTAPS 102
P+P G P SGP G +G+ A G P P +S+ P+
Sbjct: 183 PSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPA 222
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCP 141
P P G P T+GP G +G CP
Sbjct: 262 PGPDGNPGTAGPPGKAGGEGEKGICP 287
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 230 CGRGP-APSGTPWTSGPRGHSGSTARGRP-CPAAAGHDSSTTAP 105
C GP P+G P GP G++G A G+P P AG + AP
Sbjct: 162 CPAGPPGPAGNPGPKGPSGNAG--ADGQPGAPGNAGAAGAPGAP 203
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 239 GNRCGRGPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSST 114
GN P P G P GP+G +G A GRP PA + T
Sbjct: 166 GNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGT 208
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 239 GNRCGRGPAPSGTPWTSGPRGHSGST-ARGRPCPAAAGHDSST 114
GN P P G P GP+G +G A GRP PA + T
Sbjct: 160 GNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGEPGT 202
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSG-STARGRPCPAAAGHDSSTTAPSWAV 93
P+P G P GP+G G S A G P PA + P+ V
Sbjct: 139 PSPVGPPGPPGPKGPDGESGAPGEPGPAGRPGNKGAPGPAGPV 181
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRP 142
+GFV D AI +NG + + +KVQL R RP
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRNESRP 513
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 227 GRG-PAPSGTPWTSGPRGHSGSTARGRPCPAAAG 129
GRG P PSG P GP G G G P AG
Sbjct: 202 GRGLPGPSGAPGPQGPPGAPGQPGSGN-APGPAG 234
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 227 GRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSS 117
G P P+G P +GP G G + P A G+D +
Sbjct: 227 GNAPGPAGPPGPAGPNGQPGHPGQDGQ-PGAPGNDGT 262
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTA 108
GP P+G P +GP G+ G + P G D +++A
Sbjct: 196 GPGPAGPPGPAGPPGNDGQPGQ----PGGPGQDGASSA 229
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 221 GPAPSGTPWTSGPR---GHSGSTARGRPCP 141
GP P+G P +GP G SGS + G P P
Sbjct: 234 GPGPAGPPGPAGPAGPDGQSGSGSAGGPGP 263
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
+GFV + +AI +NG + + +KVQL R
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 414
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
+GFV + +AI +NG + + +KVQL R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
+GFV + +AI +NG + + +KVQL R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
+GFV + +AI +NG + + +KVQL R
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 507
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 127
+GFV + +AI +NG + + +KVQL R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 161 QCYRCGRGGHWSKEC-PKALGPDRNGFRDRA 250
QC+ C GH ++ C KA R G+ D+A
Sbjct: 575 QCHYCKNVGHMARNCKKKAFAEKRKGYEDQA 605
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 239 GNRCGRG-PAPSGTPWTSGPRGHSGST-ARGRP-CPAAAGHDSS 117
G G G P P G P SG GHSG+ G P P A G D++
Sbjct: 223 GRSGGAGTPGPQGPPGPSGQPGHSGNDGVPGTPGNPGAPGGDAA 266
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCP 141
P P G P T+GP G +G CP
Sbjct: 263 PGPDGNPGTAGPPGKAGGEGEKGICP 288
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPS 102
P P G P +GP G+ G A G P P +S+ P+
Sbjct: 187 PGPPGPPGPAGPAGNDG--AAGTPGPDGPAGESTYPEPA 223
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGSTARGRPCPAAAG 129
GP P+G P +GP G G++ P AAG
Sbjct: 224 GPGPAGPPGPAGPPGPDGASPTA--APGAAG 252
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
+GFV D A+K++ G ++DG +++++S
Sbjct: 691 FGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -3
Query: 242 RGNRCGRG-PAPSGTPWTSGPRGHSG----STARGRPCPAAA 132
+G + RG P PSG P GP G G S G P PA A
Sbjct: 192 QGGQRSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAGA 233
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGST---ARGRPCPAAA 132
GP +GTP T G G++G+ A PCPA A
Sbjct: 239 GPGNAGTPGTPGAPGNAGAPGGDAAYCPCPARA 271
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 239 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTA 108
G R GP PSG P GP G G P+ AG + A
Sbjct: 168 GARGSPGPRGPSGNPGADGPAGQLGPQGGSNVAPSPAGEPGAPGA 212
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 239 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTA 108
G R GP PSG P GP G G P+ AG + A
Sbjct: 221 GARGSPGPRGPSGNPGADGPAGQLGPQGGSNVAPSPAGEPGAPGA 265
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 242 RGNRCGRGPAPSGTPWTSGPRGHSGSTAR-GRPCPAA-AGHDSS 117
RG+ GP G +GP G G+ + G+P PA AG D +
Sbjct: 212 RGSGAPGGPGAPGNAGPAGPAGQDGAPGQDGQPGPAGPAGQDGA 255
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 242 RGNRCGRGPAPSGTPWTSGPRGHSGSTAR-GRPCPAA-AGHDSS 117
RG+ GP G +GP G G+ + G+P PA AG D +
Sbjct: 224 RGSGAPGGPGAPGNAGPAGPAGQDGAPGQDGQPGPAGPAGQDGA 267
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 251 TLDRGNRC-GRGPAPSGTPWTSGPRGHSGSTAR-GRP 147
T DRG G P P+G P GPRG SG G+P
Sbjct: 196 TGDRGKVLNGAPPGPTGPPGKVGPRGLSGGKGHDGKP 232
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRP--CPAAAGHDSSTTAP 105
P P G P GP G G+ P AAG D AP
Sbjct: 154 PGPDGQPGQDGPAGIDGAPGEAGPQGDAGAAGQDGEAGAP 193
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 71 LNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 211
L G Q ++ S + + + D CY+CG GH++ C K
Sbjct: 222 LPGQTRQNQDHHHRVDLSLIPDKKNLSDVT-CYKCGEKGHYANRCHK 267
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -3
Query: 239 GNRCGRGP-APSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
GN+ GP P G P +GP G +G G P P + G P
Sbjct: 174 GNKGPAGPPGPGGKPGPAGPPGENG--RNGEPQPGSPGEPGRPGQP 217
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 253
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 253
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 QRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAF 253
QRP G CY C R H ++ C +A P++ R AF
Sbjct: 196 QRPDCGTLF-CYHCKREWHSNQTCDEARRPEKRKSRGLAF 234
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHW- 193
+ FV + D DA++ +G DG+ ++V+ + + PG G P Q RGG +
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPG-GRPLQDGGDHRGGDFR 106
Query: 194 -SKECPKALGPD-RNGFR 241
+ + GP R G+R
Sbjct: 107 GGRGGGRGGGPQRRTGYR 124
>AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical
protein Y37H9A.6 protein.
Length = 138
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 384 DAIQLEEHHEGWNWADLEE 440
D +QL H+ W W +LE+
Sbjct: 96 DDVQLSHEHQNWKWCELED 114
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 239 GNRCGRG-PAPSGTPWTSGPRGHSGST-ARGRP-CPAAAGHDSS 117
G+ G G P P G P SG GHSG+ G P P + G D++
Sbjct: 223 GHSGGAGSPGPQGPPGPSGQPGHSGNDGVPGAPGNPGSPGGDAA 266
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 133
+ YGFV + D A++E++G V +P+K++ S + R
Sbjct: 244 KGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKER 284
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
P P G P GP G SG A P + G D AP
Sbjct: 147 PCPQGPPGPPGPPGPSGD-AGSNGNPGSPGQDGQPGAP 183
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 221 GPAPSGTPWTSGPRGHSGSTARGRPCPAAAGH 126
GP G P GP GH G P P GH
Sbjct: 180 GPGQPGQPGPHGPNGHPGKPGSQGP-PGPPGH 210
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 230 CGRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
C GPA G P +GP G +G+ P A G+D AP
Sbjct: 148 CPAGPA--GAPGPAGPAGDAGANGN----PGAPGNDGQPGAP 183
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 230 CGRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
C GPA G P +GP G +G+ P A G+D AP
Sbjct: 148 CPAGPA--GAPGPAGPAGDAGANGN----PGAPGNDGQPGAP 183
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 233 RCGRGPAPSGTPWTSGPRGHSGSTARGRP-CPAAAGHDSSTTAP 105
+C GPA G P GP G +GS G+P P AG D P
Sbjct: 146 KCPEGPA--GPPGPEGPAGPAGSD--GQPGAPGDAGKDGPPGPP 185
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCP 141
P P GTP G G GS A PCP
Sbjct: 257 PGPMGTPGGPGEPGIPGSDAAYCPCP 282
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 239 GNRCGRGPAPSGTPWTSGPRGHSGSTAR-GRPCPAAAGHDSSTTAPSW 99
G CG G +P G P G G +G+ G P ++T AP++
Sbjct: 117 GGCCGCGVSPQGPPGVPGRDGDNGADGEAGAPGKDGPDGPAATPAPNY 164
>U41270-4|ABC71847.1| 266|Caenorhabditis elegans Hypothetical
protein AH9.6 protein.
Length = 266
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 22 LRAFGRDGRCERRYQRVERYDGR 90
+R F R GRC RR+Q+V + GR
Sbjct: 89 VRKFLRVGRCGRRFQKVYVFSGR 111
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTARGRPCPAAAGHDS 120
GPA +G P GP G+ GS P PA D+
Sbjct: 235 GPAGAAGPPGPPGPAGNPGSAGASEPGPAGPAGDA 269
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 230 CGRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
C GPA G P +GP G +G+ P A G+D AP
Sbjct: 148 CPAGPA--GAPGPAGPAGDAGANGN----PGAPGNDGQPGAP 183
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 230 CGRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
C GPA G P +GP G +G+ P A G+D AP
Sbjct: 148 CPAGPA--GAPGPAGPAGDAGANGN----PGAPGNDGQPGAP 183
>AL032654-7|CAA21719.1| 219|Caenorhabditis elegans Hypothetical
protein Y52B11A.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 574 WGASAAVHRIIGRSHGTHSAPQWR*IRHG 488
WG + VH+ + S TH P+W I HG
Sbjct: 167 WGVQSCVHQFVFPSGSTH--PRWPGIPHG 193
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +2
Query: 17 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHW- 193
+ FV + D DA++ +G DG+ ++V+ T V R G P Q RGG +
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF-TRGVGPRGPSGRPLQDGGDHRGGDFR 106
Query: 194 -SKECPKALGPD-RNGFR 241
+ + GP R G+R
Sbjct: 107 GGRGGGRGGGPQRRTGYR 124
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 221 GPA-PSGTPWTSGPRGHSGSTARGRPCPAAAGHDS 120
GPA +G P GP G+ GS P PA D+
Sbjct: 245 GPAGAAGPPGPPGPAGNPGSAGASEPGPAGPAGDA 279
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 245 DRGNRCGRGPAPSGTPWTSGPRGHSGST-ARGRP-CPAAAGHDSSTTAPSWA 96
D G G P+G P GP G+ G+ A G P P T P+ A
Sbjct: 198 DGNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGNPGAPGQVTETPGTPGPAGA 249
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 420 NWADLEELAVTSFL-RPYAA-NPCHPCLIYLHCGAEW 524
N +L + T+ + RPY A NP PC++ HC +
Sbjct: 527 NEPELHRIVTTAMMHRPYGAQNPHSPCMVDGHCSKRY 563
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCP 141
P P G P +GP G G G+P P
Sbjct: 267 PGPQGPPGLAGPDGQPGHGGGGQPGP 292
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAA 132
P +G P G G G +RG P PA A
Sbjct: 178 PGQAGAPGHPGAPGQGGQRSRGTPGPAGA 206
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -3
Query: 242 RGNRCGRG-PAPSGTPWTSGPRGHSG----STARGRPCPAAA 132
+G + RG P P+G P GP G G S G P PA A
Sbjct: 192 QGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAGA 233
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 230 CGRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAP 105
C GPA G P +GP G +G+ P A G D AP
Sbjct: 148 CPAGPA--GAPGPAGPAGDAGANGN----PGAPGQDGQPGAP 183
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 5 IVRN-YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV---RQRPGMG 151
I++N +GFV D +DA+ +LNG + G+ + ++ +V +R G G
Sbjct: 32 IMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSG 84
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 245 DRGNRCGRGPAPSGTPWTSGPRGHSGSTAR 156
D G R P P G P +GP G G T R
Sbjct: 254 DDGERPLGRPGPRGPPGEAGPEGPQGPTGR 283
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRP-CPAAAGHDSSTTAP 105
P P+G ++GP G G GRP P +AGH + P
Sbjct: 151 PGPAGPAGSAGPAGPKGPD--GRPGQPGSAGHPGAPGQP 187
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = -3
Query: 242 RGNRCGRG-PAPSGTPWTSGPRGHSG----STARGRPCPAA-AGHDSSTTAP 105
RG + G P PSG P GP G G S +G+ PA AG D P
Sbjct: 196 RGGQRSHGLPGPSGAPGPQGPSGAPGQPGQSGGQGQQGPAGPAGPDGQPGQP 247
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 206 GTPWTSGPRGHSGSTARGRPCP 141
GTP +GP+G G+ A PCP
Sbjct: 256 GTPGQAGPQGAVGADAEYCPCP 277
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 227 GRGPAPSGTPWTSGPRGHSG 168
G P P GTP GP+G SG
Sbjct: 98 GCPPGPPGTPGEQGPQGESG 117
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 227 GRGPAPSGTPWTSGPRGHSG 168
G P P GTP GP+G SG
Sbjct: 98 GCPPGPPGTPGEQGPQGESG 117
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
+ +GFV D A+ +G +VDG+ ++V L+
Sbjct: 60 KGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 118
+ +GFV D A+ +G +VDG+ ++V L+
Sbjct: 60 KGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 11 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 136
R Y F+ +++ A K+ +G+ VDG+ + V R ++
Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRTQK 185
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 245 DRGNRCGRGPAPSGTPWTSGPRGHSGSTAR 156
D G R P P G P +GP G G T R
Sbjct: 254 DDGERPLGRPGPRGPPGEAGPEGPQGPTGR 283
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 218 PAPSGTPWTSGPRGHSGSTARGRPCPAAAG 129
P P G P G G G+ A PCP G
Sbjct: 297 PGPDGQPGAPGNDGTPGTDAAYCPCPGRGG 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,206
Number of Sequences: 27780
Number of extensions: 324465
Number of successful extensions: 2143
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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