Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3592
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   2.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   5.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   5.7  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   5.7  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    24   10.0 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    24   10.0 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    24   10.0 
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    24   10.0 

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 270 RSLVVTPGFRSPTDRRAAANT 208
           R++ + PGFR+P+D R  A T
Sbjct: 166 RAMKMVPGFRAPSDYRRPAKT 186


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 370 HPACDRRDPLRSPTP 326
           +P C++R P RSP+P
Sbjct: 198 NPTCEKRKPSRSPSP 212


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 346 PLRS-PTPARRPHDRILHRLAGQLPGAEFSSDT 251
           P RS  T   RP   ILHR A  L  + FS+ T
Sbjct: 417 PSRSRATIHERPSSSILHRHAHSLTSSSFSTKT 449


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 212  TPFHWVSLYPRQTITSRELTRTSAPHVPGIAKIHP 108
            TP H+ SLY  + I    L+  + P V G +   P
Sbjct: 897  TPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKP 931


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 240 SPTDRRAAANTVSLGLPIPSSNNHVPRAHTHVCSS 136
           +P+D+   +N+    L + + N H+ + H+ V  S
Sbjct: 81  NPSDQDVMSNSTEADLQLHTKNEHLEKRHSFVGKS 115


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 213 NTVSLGLPIPSSNNHVPRAHTHVCSSCSRYRQDSPPTRK 97
           NTV LG  + S  N +   H H+  + + Y     P  K
Sbjct: 344 NTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSK 382


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 368 PCVRSPGSTPVSDSGTTTARQDFTPVGGTASRGG 267
           PC R   STP +  G+   R  F   GG   RGG
Sbjct: 435 PC-RLDFSTPRTGGGSRGGRGGFGGRGGFGGRGG 467


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 315 GRRAGVGDRSGSRRSHAGWTGG 380
           G R G G R G+R    G +GG
Sbjct: 42  GARGGRGGRGGARGGRGGSSGG 63


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 359 RSPGSTPVSDSGTTTARQDF 300
           + PG TP+ +  T T RQ F
Sbjct: 369 KRPGLTPIEEKSTFTLRQFF 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,534
Number of Sequences: 5004
Number of extensions: 35465
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)