Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3591
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    30   0.35 
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   3.2  
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 231 EPLSNLSIEECTKN--NSVQTVIRATKAIKSIGSI-VRRNARTRLALNVPPIQGHGQ 392
           EP   L++  C +N    V  +IR    ++  G I  + +  TR A  +PPI GH Q
Sbjct: 70  EPNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINYQIDPETRPAFRLPPISGHVQ 126


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 280 TELFFVHSSIDKFESGSSKNAYLHSFTNI 194
           T  +F+  S+ K+ES  +K AYL   +NI
Sbjct: 231 TRSYFLQESLHKYESTKNKIAYLSFGSNI 259


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 253 IDKFESGSSKNAYLHSFT--NILVHIFF 176
           +DK E+GS   AYLH  T  + +  IFF
Sbjct: 48  LDKIENGSDIQAYLHEKTKQSTVPSIFF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,850
Number of Sequences: 5004
Number of extensions: 47929
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)