Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3588
         (509 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.              33   0.77 
BC068513-1|AAH68513.1|  576|Homo sapiens ARHGEF3 protein protein.      30   4.1  
BC034491-1|AAH34491.1|  406|Homo sapiens chromosome 12 open read...    29   9.4  
BC027600-1|AAH27600.1|  406|Homo sapiens chromosome 12 open read...    29   9.4  
BC026075-1|AAH26075.1|  406|Homo sapiens chromosome 12 open read...    29   9.4  
BC024183-1|AAH24183.1|  406|Homo sapiens chromosome 12 open read...    29   9.4  

>AF217994-1|AAG17236.1|  353|Homo sapiens unknown protein.
          Length = 353

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 449 KKKKKNSRGGPVPNS 493
           KKKKKNSRGGPVP +
Sbjct: 46  KKKKKNSRGGPVPGN 60


>BC068513-1|AAH68513.1|  576|Homo sapiens ARHGEF3 protein protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 332 GSARAAVSKSHPFWLSLCSPTCPGETGKASGP 427
           G A A V+K +PF+L++    C  E   ASGP
Sbjct: 46  GPAAAMVAKDYPFYLTVKRANCSLELPPASGP 77


>BC034491-1|AAH34491.1|  406|Homo sapiens chromosome 12 open reading
           frame 12 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 200 KFAFPMQIFMSYNMYYIFFYCLNKWTIS-QPTW 105
           KF  P+Q+F  Y ++ + F C + W+ S  P W
Sbjct: 101 KFPCPVQVFRVYGLHPLCFCCCSCWSGSWNPGW 133


>BC027600-1|AAH27600.1|  406|Homo sapiens chromosome 12 open reading
           frame 12 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 200 KFAFPMQIFMSYNMYYIFFYCLNKWTIS-QPTW 105
           KF  P+Q+F  Y ++ + F C + W+ S  P W
Sbjct: 101 KFPCPVQVFRVYGLHPLCFCCCSCWSGSWNPGW 133


>BC026075-1|AAH26075.1|  406|Homo sapiens chromosome 12 open reading
           frame 12 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 200 KFAFPMQIFMSYNMYYIFFYCLNKWTIS-QPTW 105
           KF  P+Q+F  Y ++ + F C + W+ S  P W
Sbjct: 101 KFPCPVQVFRVYGLHPLCFCCCSCWSGSWNPGW 133


>BC024183-1|AAH24183.1|  406|Homo sapiens chromosome 12 open reading
           frame 12 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 200 KFAFPMQIFMSYNMYYIFFYCLNKWTIS-QPTW 105
           KF  P+Q+F  Y ++ + F C + W+ S  P W
Sbjct: 101 KFPCPVQVFRVYGLHPLCFCCCSCWSGSWNPGW 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,316,046
Number of Sequences: 237096
Number of extensions: 1749750
Number of successful extensions: 7095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7095
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)