Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3586
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    27   6.7  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    27   8.8  

>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 438 FQFKCFL*PYWIYRQNEIYSNMLKRI 361
           F   CFL PY  Y+ +E + N L RI
Sbjct: 255 FTLLCFLAPYLTYKMSEAWQNELHRI 280


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 523 ISYSEFSLLYRDHLLFVGLSAVIT-HTYFFSI*MFSLTLLDLPTKRDL 383
           IS S+F  +Y D +L +GL+ + T     F I   SLT L++P  +++
Sbjct: 128 ISVSQFRWIYNDEMLELGLTNLTTIGCRNFEISSGSLTNLNVPNLKNI 175


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 523 ISYSEFSLLYRDHLLFVGLSAVIT-HTYFFSI*MFSLTLLDLPTKRDL 383
           IS S+F  +Y D +L +GL+ + T     F I   SLT L++P  +++
Sbjct: 161 ISVSQFRWIYNDEMLELGLTNLTTIGCRNFEISSGSLTNLNVPNLKNI 208


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 446 ILFFNLNVFFDPIGFTDKTRFTLIC 372
           ILF +L V+    GF +KT F +IC
Sbjct: 20  ILFSSLIVYLYVSGFAEKTSFNVIC 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,291
Number of Sequences: 27780
Number of extensions: 187562
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)