Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3583
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 29 0.48
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 28 1.1
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 2.6
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.4
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 27 3.4
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 26 4.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 29.5 bits (63), Expect = 0.48
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Frame = +3
Query: 66 CIPCNCNGHSNMCNPKTGVCYDCKDNTDGPQCELCKPGYDRDGYGNCVESDNFISTQQPC 245
C C NGH K +CY+C + T E +P ++ Y C + + + P
Sbjct: 19 CYNCGENGHQARECTKGSICYNC-NQTGHKASECTEPQQEKTCYA-CGTAGHLV-RDCPS 75
Query: 246 RCNP-DGVE-VPCDETGTCSCKQNVEGDYCDTCRPGTYGLDRNNPQGCLSCYCSG-VTSE 416
NP G E C G + G G +G R+N C +C G +
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQQSG----GRFGGHRSN-MNCYACGSYGHQARD 130
Query: 417 CHEGV 431
C GV
Sbjct: 131 CTMGV 135
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 156 GDHPCYPCSRNRPLSLDYTYSNDRYSCKVCILSS 55
G HP +P S N L ++T SN KVC S+
Sbjct: 467 GKHPSFPLSNNGELIGEFTLSNITDVEKVCACSN 500
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 117 GVCYDCKDNTDGPQCELCKPGYDRDGYGNCVESDNFISTQQP 242
G C++C +G L KP + +ESD IST++P
Sbjct: 350 GACFECVKFDEGNAAVLTKPDVIKR-----IESDGLISTEKP 386
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 39 GDRTIYLKECIPCNCNGHSNMCNPKTGVCYDCKDNTDGPQCELCKPGYDR 188
GD + + I + SN CN T C D+ P C P + R
Sbjct: 46 GDNLLPQDDQIASDPRSESNSCNGNTSSSLPCTDSYQYPLKHSCTPSFLR 95
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 261 RQDCICKVAGC**SYRIQRSCRSRL--CRIQACRVRTGDHPCYPCSRNRPLSLDYTYSND 88
R D + VA + R++R S + C I R+R +P +N LS D ++SN
Sbjct: 608 RTDALSNVA----TTRLKRKLTSAIIDCSIPRRRLRHYSNPEIAEFKNFRLSTDISHSNV 663
Query: 87 RYSCKVC 67
R S K+C
Sbjct: 664 RNSKKLC 670
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/109 (24%), Positives = 44/109 (40%)
Frame = +1
Query: 142 TRMVPSANSASLDXXXXXXXXXLNPITSSAPSNLADAILTASKYHVTRLVPVLASRTSKA 321
T + P++N AS + +SS SN I T+S +T VP +S S +
Sbjct: 56 TTIYPTSNVASNTSENYPYTGSKSLSSSSILSN--STISTSSSTPITASVPTSSSILSNS 113
Query: 322 ITVTPADLEPTGWIETTLRDVSRVIVPASPANVTRASTTVEYRWPHQFS 468
T + + T T+ +S +P+S + TT QF+
Sbjct: 114 TIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISASTITTTIISGSTQFT 162
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 309 SACKNRYQSRHMVLRRRQDCICKVAGC**SYRIQRS 202
+AC + Y+ ++ C+C V GC R+QRS
Sbjct: 193 TACNHFYEKDAILSLLNPTCVCPVVGC--EARLQRS 226
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 353 VGSRSAGVTVIAFDVLLARTGTSLVTWYFDAVRIASARLLG 231
VGS +TV DV+ R + ++ Y I+SA++LG
Sbjct: 33 VGSVITTLTVTPLDVVKTRLQSESISQYSSTQPISSAKILG 73
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 162 ELCKPGYDRDGYGNCVESDNFISTQQPC 245
EL PG D Y + + DNF++ + C
Sbjct: 643 ELPPPGLDATAYSSWEKGDNFVTKKNVC 670
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 446 YSTVVDALVTFAGDAGTITRETSLRVVSIQPV 351
Y T D TF GD +TR + + + +Q +
Sbjct: 1188 YYTAADGTKTFVGDLAQLTRWSPMDIQGLQDI 1219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,061
Number of Sequences: 5004
Number of extensions: 70539
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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