Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3583
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 35 0.070
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 34 0.093
03_06_0313 + 33073542-33074464,33074901-33075069 33 0.16
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 33 0.28
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 32 0.50
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 31 0.87
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 31 0.87
11_06_0530 + 24696399-24697592 31 1.1
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 30 1.5
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 29 2.6
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748... 29 3.5
04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791 28 6.1
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 28 6.1
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 34.7 bits (76), Expect = 0.070
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +3
Query: 102 CNPKTGVCYDCKDNTDGPQCELCKPGYDRDGY--GNCVESDNFISTQQPCRCNPDGVEVP 275
C C++ D G +C C GY+ + Y G C + D T+ E P
Sbjct: 284 CRSAHSECFNASDG-QGYRCR-CSKGYEGNPYLDGGCKDIDECQRTK----------EYP 331
Query: 276 CDETGTCSCKQNVEGDYCDTCRPGTYGLDRNNPQGCL 386
C G C+ N G Y CRPGT G + GCL
Sbjct: 332 C--FGKCT---NTIGSYTCECRPGTSG-NATQENGCL 362
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 34.3 bits (75), Expect = 0.093
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 6 SCET-CAPGYTRGDRTIYLKECIPCNCNGHSNM-CNPKTGVCYDCKDNTDGPQCELCKPG 179
SCE C G G + C PC + ++ C+ + C + G C
Sbjct: 319 SCERGCHAGKCGGCPLQGRRTC-PCGKKDYPSLDCDAEAATCGSTCEKVLGCGRHKCP-- 375
Query: 180 YDRDGYGNCVESDNFISTQQPCRCNPDGVEVPCDETGTCSCK 305
+R G+CVE+ + T+ CRC EVPC + TC K
Sbjct: 376 -ERCHRGSCVETCRLVITKS-CRCGGLKKEVPCYQELTCERK 415
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 219 YRIQRSCRSRL-CRIQACRVRTGDHPCYPCS 130
Y C RL C I C V D PC PC+
Sbjct: 250 YSCSGKCNKRLGCGIHRCPVDCHDGPCPPCA 280
>03_06_0313 + 33073542-33074464,33074901-33075069
Length = 363
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +1
Query: 220 TSSAPSNLADAILTASKYHVTRLVPVLASRTSKAITVTPADLEPTGWIETTLRDVSRVIV 399
+S APSN + +S P A+ S A VTPA ++ + ++ETTL D++
Sbjct: 79 SSPAPSN--GRLHFSSSAATASPSPATAAAASSAANVTPAVVDRSLFLETTLLDLNSRGA 136
Query: 400 PASPANVTRAS 432
PA A++ A+
Sbjct: 137 PAPAASMAAAA 147
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 32.7 bits (71), Expect = 0.28
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Frame = +3
Query: 87 GHSNMCNPKTGVCYDCKD--NTDGPQCELCKPGYDRDGY----GNCVESDNFISTQQPCR 248
G + C+ DC + N DG C+ C GYD + Y G C + D ++P R
Sbjct: 272 GTNRSCSVCVSDQSDCANATNGDGYLCK-CSEGYDGNPYLKGNGGCTDIDE---CKEPDR 327
Query: 249 CNPDGVEVPCDETGTCSCKQNVEGDYCDTCRPGTYGLDRNNPQGC---------LSCYCS 401
C+ TG+ C N EG Y CR G + N +GC L+ CS
Sbjct: 328 CS----------TGS-RC-HNTEGYYYCKCRFPRRGDGKVNGKGCHLPKYIVPTLATVCS 375
Query: 402 GVTSECHEGVHYSRIPMAAPVFGENNGGYSLTDLN 506
++ ++ R +F NNGG L D+N
Sbjct: 376 VISLTVLVCLYKRR---KRRMFANNNGGRLLKDMN 407
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Frame = +3
Query: 42 DRTIYLKECIPCNCNGHSNMCNPKTGVCYDCKDNTDGPQCELCKPGYDRDGY--GNCVES 215
D I K C N S C C D N G +C+ C GY+ + Y C +
Sbjct: 239 DWAITSKTCTESRRNKTSYACISNNSQCIDNLTNAQGYRCK-CSNGYEGNPYIKDGCKDI 297
Query: 216 DNFISTQQPCRCNPDGVEVPCDETGTCSCKQNVEGDYCDTCRPGTY 353
D + + PC G C+ N G++ +C PG+Y
Sbjct: 298 DECL----------NNATYPC--KGICT---NTLGNFTCSCSPGSY 328
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 72 PCNCNGHSNMCNPKTGVCYDCKDNTDGPQCELCKPGYDRDGYGN 203
PCN +G +C P G+C+ + P C C PGY+ + +GN
Sbjct: 281 PCNIHG---LCGPN-GICH----YSPTPTCS-CPPGYEMNSHGN 315
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +3
Query: 72 PCNCNGHSNMCNPKTGVCYDCKDNTDGPQCELCKPGYDRDGYGNCVESDNFIS 230
PC C GH + G C G +C L +D D YG + D F S
Sbjct: 93 PCRCRGHGRRDRARAGAAPQC-----GGRC-LSSVPFDADLYGGVSDPDRFAS 139
>11_06_0530 + 24696399-24697592
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 677 LRNSCLIDSEPPYDSTLLPGKMGNDQYSSFSGGYEKYVHELAFI---GNWY 534
LRN+ L PP +TL+ + +++S GG + + L+F+ GNW+
Sbjct: 202 LRNNRLTGGVPPLPATLVYLSLAGNRFSGRVGGVLRRLPRLSFLDLGGNWF 252
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 156 GDHPCYPCSRNRPLSLDY-TYSNDRYSCKVCILSSI*FDHP*CNQ 25
G C C R P+ + Y T + R C C+ SSI D P C Q
Sbjct: 352 GTPRCCSCERMEPMDIKYITLDDGRKLCLECLNSSI-MDTPECQQ 395
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 29.5 bits (63), Expect = 2.6
Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 11/170 (6%)
Frame = +3
Query: 9 CETCA-PGYTRGDRTIYLKECIPCNCNGH-SNMCNPKTGVCYDC-KDNTDGPQCEL--CK 173
C C PG+ + + C C GH +N C P G+C +C K +C
Sbjct: 60 CHACGLPGHIAAECSSK-DLCWNCKEPGHMANSC-PNEGICRNCGKSGHIARECSAPPML 117
Query: 174 PGYDRDGYGNCVESDNF---ISTQQPC-RCNPDG-VEVPCDETGTCSCKQNVEGDYCDTC 338
PG R NC + + + ++ C C G + C C+ NV G C
Sbjct: 118 PGEMR-LCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEPVCNL-CNVSGHLAREC 175
Query: 339 RPGTYGLDRNNPQGCLSCYCSGVTSECHEGVHYSRIPMA-APVFGENNGG 485
+R P Y V C++ H SR MA A + N GG
Sbjct: 176 PKSDAINERGGPPPFRGGYSDVVCRACNQVGHMSRDCMAGAFMICHNCGG 225
>01_02_0053 +
10673264-10674510,10674552-10674576,10674802-10674886,
10675074-10675084
Length = 455
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 211 NPITSSAPSNLADAILTASKYHVTRLVPVLASRTSKAITVTPADLEPTGWIETTLRD 381
NP+ S +P +L + AS++H P+LASR +K + ++ P I RD
Sbjct: 102 NPVASPSP-HLLSFLEFASRHHALHS-PLLASRLAKLLMISSTRALPVPKIAAAKRD 156
>04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791
Length = 238
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 461 SFRRKQRRLQPHRLKRRKNIQRTFRTSS 544
S RR++RRL+PHR +R + ++ T++
Sbjct: 64 SARRRRRRLRPHRRRRVQQVRHRTTTTA 91
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 9 CETCAPGYTRGDRTIYLKECIPCNCNGHSNMCNPKTGVCYD 131
C C G+ GD I L+ C GHS MC P T YD
Sbjct: 224 CSICLDGFYDGDELIKLR------C-GHSVMCMPVTRSWYD 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,027
Number of Sequences: 37544
Number of extensions: 498399
Number of successful extensions: 1431
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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