Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3582
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 31 0.18
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 30 0.31
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 29 0.95
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 28 1.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 2.2
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 27 2.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.8
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.1
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 5.1
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 6.7
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 6.7
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 6.7
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 26 6.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.9
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.9
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 220 DAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWM-CSKNLFSNFKDPKIILI 393
+A++ R + +E +D + V+ DD VLK W+ C + + N D ++ L+
Sbjct: 455 EARNLLRMTFEETLPLQNDTINKVEKVKHFDDSIRVLKYWLSCYERILPNSADERVFLV 513
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 160 TNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 318
+ N I + V+ +NSS S+ + + DHDN S A TV + +D+
Sbjct: 73 SQNSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETVVLNEDE 125
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.95
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 187 KTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 285
+ ++ + SS++ +SR S+DENK N S
Sbjct: 367 RRNLKSLRSSRNLHQQSRKSLDENKPNSFSNVS 399
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 109 IKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQD-ESRNSIDENKEKDHDNAS 285
+K K K E +++ + + KTDV + SK +++ ESRN+ DEN K N S
Sbjct: 97 VKPKAKKKNSKEKISKSSKQDEH---KTDVHKESVSKLSKNLESRNNRDENSAKREKNNS 153
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/63 (28%), Positives = 39/63 (61%)
Frame = +1
Query: 205 VNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWMCSKNLFSNFKDPKI 384
V S+ ++++ NS+ ENK KD NA ++V + + ++L +++ +NL S+F+ +
Sbjct: 514 VEISQFSREDFSNSLSENKTKDSINA-----IDVHNSEQNLLAVFVIFRNL-SHFEANQN 567
Query: 385 ILI 393
+L+
Sbjct: 568 VLV 570
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 178 RTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 318
+ LK + +V+ S D +S DE KEK +NAS + + L+ K
Sbjct: 78 KKLKQLIHEVDDSLGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTK 124
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 199 SDVNSSKDAQDESRNSIDENKEKDHDNASSAST 297
S+ + S + DES +S E++ DN SS+S+
Sbjct: 100 SEASGSGSSSDESDSSSSESESSSEDNDSSSSS 132
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 112 KCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 285
K R + ++E V E E+I TLKTD+++ +K+ Q ES+ ++ K +N++
Sbjct: 1240 KSLRENLERNEEVITELR-EKIETLKTDLANFRLNKE-QLESQLQTEKAAVKKLENSN 1295
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 380 FGSLK-LLNRFFEHIHIFKTLHL 315
F LK L+++F+E +H FK HL
Sbjct: 543 FAQLKPLISQFYESLHKFKNFHL 565
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 118 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSK----DAQDESRNSIDENKEKDHDNAS 285
++V I Q +AEE+ L +V ++S + DA+ +NS D +++
Sbjct: 416 QKVSILQKR-IAEESKQ---LALNKEVRKISSREIKMLDARSMLKNSFDGSRDLQKSLIE 471
Query: 286 SASTVEVLDDK*SVLKMWM 342
T+ ++D+ ++ KMW+
Sbjct: 472 HVRTLRRIEDEITLTKMWI 490
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 95 QNFYALVYNQFNNITVLINFDK 30
QN Y VY+Q N + I+F K
Sbjct: 446 QNIYVSVYSQMNGVVQQIHFSK 467
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 VKITQSEP--VAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHD 276
V +T+ P + E N+ R+L + + K D ++ D+ KEK+H+
Sbjct: 387 VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEHE 439
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 136 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEK 267
+ E E+ N+E+ ++ + D ++ NS+ + DE+ N ++ K
Sbjct: 243 EEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSK 286
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 159 LLSHRLT--LSYFNSFTFNIAHFTKLLRF 79
+L H +T LS+F SFTF+ F+ L+ F
Sbjct: 2 VLKHSVTYNLSFFISFTFSSIFFSSLILF 30
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 395 IFLHTFSNAIYFVSANLLFSKQNIFRFSKVTINLLCIMISAYQFECII*CRYCDLAC 565
I LH + Y +SA +F + F+ N + +++ +CI +YC AC
Sbjct: 712 IRLHVYFPNNYPISATPVFQLERSSAFNDEQFNYVFNTLTSISDQCISSHKYCMDAC 768
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 346 SKNLFSNFKDPKIILINFFAHI 411
SK LFS + D K +L+NF ++
Sbjct: 130 SKLLFSQYSDEKKVLVNFVYNV 151
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 202 DVNSSKDAQDESRNSIDENKEKDHDNASSASTV 300
D +S +A DES DE+ D N + S V
Sbjct: 345 DEGTSTEANDESSEDDDEDNNTDEANEDAQSNV 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,321
Number of Sequences: 5004
Number of extensions: 60652
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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