Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3578
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.3  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   3.0  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    25   6.9  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   6.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.1  

>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 370 SEIINARINRKSNLNNGHDLRSYCC 444
           SE+   R+  K   NNGH + S CC
Sbjct: 12  SEVETDRVLEKDQANNGHFVDSDCC 36


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 473 EYAGFCDFRKYTXTRDVLIYVHEL 544
           ++  F D+R YT T D++I+  EL
Sbjct: 560 DWKRFTDYRSYTETDDIVIWFWEL 583


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 155 TPNSRLMSQGGFQNLYSDIRADNHPNWAASCNRPSRS 45
           T NS++++    +    D R D H NW    + P  S
Sbjct: 40  TSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKIS 76


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 463 ERVSITYNNNFANRGHYSNYFYGLFSHLLFQTF 365
           ERV    NN F     Y+     +F+H  F+ F
Sbjct: 150 ERVITLINNKFRTTSKYNQIINNIFAHPRFKEF 182


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 556 QDLS*LMY--INKHVSSXGVFTKIAKTRVLDDKERVSITYNNNFANRGHYSNYFYGLFSH 383
           Q  S LMY   ++H++       + +   LD    +   + N+  +RGH   Y + +   
Sbjct: 285 QKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFAMLEQ 344

Query: 382 LL 377
           LL
Sbjct: 345 LL 346


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 445 YNNNFANRGHYSNYFYGLFSHLLFQTFQILYN 350
           Y++NF N+G    Y +G +S  L  +F+ + N
Sbjct: 309 YSDNFVNKGINWYYNWGSYSSGLSSSFEYVLN 340


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -2

Query: 439 NNFANRGHYSNYFYGLFSHLLFQTFQIL-----YNFWAYGRLCRTSDIPCYPR*RN 287
           +NF+N  H       +FS LL +TF+++     Y F A     R   I C+   RN
Sbjct: 635 SNFSNMRHKERSVRKVFSPLLGETFELVREDRNYRFLAEKVCHRPLIIACHAESRN 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,174
Number of Sequences: 5004
Number of extensions: 51215
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)