Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3578
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    34   0.074
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    27   8.4  

>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = -1

Query: 455 FNYVQQ*-LRKSWPLFKLLLRFILAFIISDVSNTLQLLGLRS 333
           F+++QQ  L  SW ++KL+L   LAF+++ V +TL ++G +S
Sbjct: 101 FDFLQQPRLNHSWYIYKLILLTNLAFVLNVVYSTLVVIGYKS 142


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 CKVFETSEIINARINRKSNLNNGHDLRSYCCT 447
           CKVF+  E+++ R  RK N      +R  CC+
Sbjct: 332 CKVFQVKELLHGRTLRKKNPTEKCSIRKSCCS 363


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 291  EITRCDKFQTDKVYGLRILVVRPHRSGIHRRYAI*DVKLALNHY 160
            + T  D + TDK+  + + +V  ++S +  RY + D   A ++Y
Sbjct: 1024 QTTLGDIYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYY 1067


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 570 YENEHKIYLN-SCT*ISTSLVXVYLRKSQKPAYSMIKSEFQLRTTITSQIVAIIQITFT 397
           ++N++ I L  SC  ++  ++ ++LR  ++  Y MIK  F    TIT   V +   T +
Sbjct: 154 FQNKYSIILPLSCMFVNIGII-LHLRFKREGTYEMIKKVFSKHKTITPFAVPLQNTTLS 211


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 291  EITRCDKFQTDKVYGLRILVVRPHRSGIHRRYAI*DVKLALNHY 160
            + T  D + TDK+  + + +V  ++S +  RY + D   A ++Y
Sbjct: 1024 QTTLGDIYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYY 1067


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 291  EITRCDKFQTDKVYGLRILVVRPHRSGIHRRYAI*DVKLALNHY 160
            + T  D + TDK+  + + +V  ++S +  RY + D   A ++Y
Sbjct: 1024 QTTLGDIYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYY 1067


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 427 NRGHYSNYFYGLFSHLLFQTFQILYNFWAYGRLCRTSDIPCY 302
           N  H+ NYF  L+    F    + +NF+   RL  ++   CY
Sbjct: 30  NWKHFDNYFLKLYICQFFFNMWMYWNFYITSRLPASTCKDCY 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,745
Number of Sequences: 27780
Number of extensions: 278250
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)