Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3577
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 31 0.050
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 28 0.47
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 0.62
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 27 0.82
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.1
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 2.5
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 25 3.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 4.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 4.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 24 5.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 7.6
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.6
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 24 7.6
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 7.6
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.050
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 70 HAQPPFRDKVPEAEDKPLNVAENLSSEQELIDQANT--IKDID 192
H+ P F+ P ++PLN E+LS E +L A +K++D
Sbjct: 86 HSNPTFKISKPTVLEQPLNAIEHLSPETDLSSSAEQQFMKELD 128
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 27.9 bits (59), Expect = 0.47
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 46 ANYIRASPHAQPPFRDKVPEAEDKPLNVAENLSSEQELIDQANTIK 183
++Y PH QPP RD + +N + SEQ I + N +K
Sbjct: 86 SSYAAYDPHDQPPERDVSLKESSNKINPSNFFDSEQ--ITKINAVK 129
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 0.62
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 154 ELIDQANTIKDIDNSLRANKKEVVDIPVK----VIVEEIKPSLKSDLENVEVPDENE 312
ELID+A DI + + VD V+ ++ +E++ + + D+E E+ D E
Sbjct: 878 ELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKE 934
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 0.82
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 16 DDHETTRGPVANYIRASPHAQPPFRDKVPEAEDKPLNVAENLSSEQELIDQANTIKDIDN 195
DDH T V N + S HA + + V ED+ + E LS +E I + K N
Sbjct: 208 DDHLRTHPSVNNLGKDSDHADKMYNEGVILGEDEAME-EEALSEAEENIPKK---KPDFN 263
Query: 196 SLRANKKEVVDIPVKVIVEEIKPS-LKSDLE 285
LR + P+K +E++ S +SDLE
Sbjct: 264 ELRKKHYFAMAKPLK--RDELESSGTESDLE 292
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 103 EAEDKPLNVAENLSSEQELIDQANTIKDIDNSLRANKKEVVDI--PVKVIVEEIKPSLKS 276
E ++ ++ E L+S++ + ++ I NS +VD +++ +K LK+
Sbjct: 741 ELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKA 800
Query: 277 DLENVE 294
DL N+E
Sbjct: 801 DLSNLE 806
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 2.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 214 KEVVDIPVKVIVEEIKPSLKSDLEN 288
K VVDI + ++EIKP+++ L N
Sbjct: 90 KYVVDISPDIDIKEIKPNIRVALRN 114
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.0 bits (52), Expect = 3.3
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 25 ETTRGPVANYIRASPHAQPPFRDKVPEAEDKPLNVAENLSSEQELIDQANTIKDIDNSLR 204
E+T + Y+ + Q +D++ + + + + + E+E A TIKD SL
Sbjct: 28 ESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLD 86
Query: 205 AN 210
+N
Sbjct: 87 SN 88
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 4.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 202 RANKKEVVDIPVKVIVEEIKPSLKSDLENVE 294
+ N + V++IPV+ I +K + K ++NVE
Sbjct: 540 KQNLEPVINIPVEEIDFPMKVATKESMKNVE 570
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.6 bits (51), Expect = 4.4
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +1
Query: 88 RDKVPE--AEDKPL---NVAENLSSEQELIDQANTIKDI-DNSLRANKKEVVDIPVKVIV 249
+ VPE AED + +V E+ SE + +++ ++D +NS+ +KK +P
Sbjct: 506 QSSVPENKAEDSVVLKSSVPED-KSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKT 564
Query: 250 EEIKPSLKSDLENVEVPDENEEIKRPLV 333
E PS+ + +N P+ + + P V
Sbjct: 565 EGYTPSVVREEKNYSEPNASPSVIPPRV 592
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 97 VPEAEDKPLNVAENLSSEQELIDQANTIKDIDNSLRAN 210
+P+ ++ N+SS +NTI ++D++L+A+
Sbjct: 238 IPKRTYSARSIPSNISSTNVATTPSNTIFEMDDTLKAD 275
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 256 IKPSLKSDLENVEVPDENEE 315
IKPS+ D+ ++EV D +++
Sbjct: 368 IKPSINKDISSIEVKDLSQK 387
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 23.8 bits (49), Expect = 7.6
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Frame = +1
Query: 79 PPFRDKVPEAEDKPLNVAENLSSEQELIDQAN----------TIKDIDNSLR---ANKKE 219
PP VP+ PLN+ + SS+ ++ N + +D+ +SL +K
Sbjct: 81 PPTNISVPQISSNPLNLMKK-SSDNDIFTTFNDTTNDCMNEASCEDVRHSLLQIIESKSN 139
Query: 220 VVDIPVKVIVEEIKPS--LKSDLENVE 294
+ D K++ E +K + L+ LEN+E
Sbjct: 140 LSDSVHKMLGERVKTNLLLQGQLENME 166
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 7.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 115 KPLNVAENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEE 255
KP+ N+ + L D+ +K I + N IP+ V+ EE
Sbjct: 241 KPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNSFGDQVIPLSVLFEE 287
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 157 LIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIK 261
L+D +NT+ D++ +R +K V V + E K
Sbjct: 371 LVDVSNTLDDLNKDMRFHKLSEVRQHVNTLKEATK 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.130 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,958
Number of Sequences: 5004
Number of extensions: 16343
Number of successful extensions: 69
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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