Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3576
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.29
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.66
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 1.5
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 3.5
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.7
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 8.1
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.29
Identities = 38/146 (26%), Positives = 68/146 (46%)
Frame = -1
Query: 648 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTPAVAELSESGLTKSLMRLLVFSSTQSL 469
V S+L+ + S S S ++ + + T + + +S S + S + ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635
Query: 468 IDLAATVFFEKSIFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 289
+ ++++ S +S + T +++ TY+ I SS+ L+ S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687
Query: 288 NSVRIASSSGKPIAFKSSSWVSPSEA 211
+S +ASSS PI SSS VS A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -1
Query: 423 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 244
TS + TSL ++A ++ SS+ + S +L ++S SSS
Sbjct: 7 TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66
Query: 243 KSSSWVSPSEA 211
SSS+ SP+ +
Sbjct: 67 SSSSFTSPASS 77
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 287 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 382
FA + ++L KGV+L M + +HDG L +
Sbjct: 79 FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 180 ENAERTTLFPWII-FHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTN 28
E AE LF I+ F YF ++ +I+ + E ++ + D C D K N
Sbjct: 142 ELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHLHDVCGIVHRDIKPEN 193
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 557 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 652
V+A+ F+ W + R T D DF K KTI
Sbjct: 68 VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 446 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 535
+T +A SIN W+ +NT I+ + N SLS
Sbjct: 9 STSSASSIN-WIPKNTKTSIESVSNTISLS 37
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 483 STQSLIDLAATVFFEKSIFWTSE 415
STQ+ +D T FFE IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 681 SPRLYIMGTLIVLSLLT*KSRSLVSRSS 598
SP LY+ ++ L T SRSLV+RS+
Sbjct: 79 SPVLYLFSYILPSKLFTIFSRSLVNRSA 106
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.1
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +2
Query: 287 FASKSRDLRSIKGVELKMANKV--YVHDGGKLD--ENFAVVSRDVFNSDVQNIDFSKNTV 454
F S + S++ VE A K+ +++ G ++ N V +R + FS+
Sbjct: 82 FRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCRNCGVANRFTIIKPKSDARFSQGLC 141
Query: 455 AAKSINDWVEENTNNRIKDLVNPDSLSSATAGVLVNAIYFKGAWSSKFDERLTSDRD 625
A + ++ + NT + + L + L+ + F+G+ SSKF E + S+ D
Sbjct: 142 TACTFQNYPDLNTCE-----ICGNQLKNVDRNQLIQ-LSFRGSGSSKFYEAIKSETD 192
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 73 NLSNVLKNGNDNFTARMFTEVVKNNPGEKRCPLGI 177
N N+LK ND AR +TE V K P GI
Sbjct: 56 NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,171
Number of Sequences: 5004
Number of extensions: 56286
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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