Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3575
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   5.1  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   6.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.9  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   8.9  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.9  

>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 141 SSPLLDISFFDSTPLTTILGFSHPALASLLLPVYVKTSN 257
           S  LLDI  FD+TPL  I+ +       +  P+ V  SN
Sbjct: 169 SFELLDILTFDTTPLFPIIKYDSENNGLMYKPMIVLHSN 207


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 421 ELFRNKNLSHSHSNVWPGPL 362
           +L+ N +LS SHS++  GPL
Sbjct: 108 KLYSNNSLSSSHSSILNGPL 127


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 111 SAGLRITLVYSSPLLDISFFDSTPLTTILGFS 206
           S GL   +      LD+SF D  PL ++ GF+
Sbjct: 3   SGGLEDDIQLVHEFLDVSFEDIKPLVSVNGFA 34


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 664 LMKLTINNKNQHKKSFYW 717
           L K+   N+NQH+ S +W
Sbjct: 11  LQKIVYRNRNQHRLSVWW 28


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 176 HATDHDPWLLSSSSCQPAFAGLRQDIE 256
           H T H+   L+ SS  PA   LRQ IE
Sbjct: 544 HDTPHNSVKLTGSSTTPASVSLRQMIE 570


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 99  VASFSAGLRITLVYSSPLLDISFFDSTPLTTIL 197
           +AS +   +  L  SSP + +S + STP  TI+
Sbjct: 265 IASLALSRKALLPISSPSIPMSIYRSTPPDTII 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,612
Number of Sequences: 5004
Number of extensions: 57596
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)