Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3575
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0404 - 21000267-21001562                                         29   4.0  
04_03_0155 - 11960973-11961896                                         29   4.0  
07_03_0180 + 14804784-14805231,14806855-14806892,14807135-14807143     28   9.3  

>05_04_0404 - 21000267-21001562
          Length = 431

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 302 YSMMLGASLYIMLFNIRCLDVDRQKQAGKSWMREAKDRG 186
           Y  +LG   +I  F I  +DV  ++  G SW  +  +RG
Sbjct: 356 YLSVLGVGSFISSFLISAIDVVTRRDGGTSWFDDDLNRG 394


>04_03_0155 - 11960973-11961896
          Length = 307

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 575 IFSTAPSMRY*SHSITIVCKN*FKAPSVLDL*NLQLITK 691
           IFS A  + Y SH + +V  N F  P  + + NLQL+TK
Sbjct: 269 IFSNAIVVSY-SHQLPVVPYNAFNLPPQVRIRNLQLMTK 306


>07_03_0180 + 14804784-14805231,14806855-14806892,14807135-14807143
          Length = 164

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -1

Query: 302 YSMMLGASLYIMLFNIRC-LDVDRQKQAG---KSWMREAKDRGQWRGIEEAYVQ*W 147
           Y M +G S Y +++   C L V+ + +A    ++W ++ K  GQ++ ++ + ++ W
Sbjct: 20  YKMPIGMSPYQLVYGKTCHLPVELEHRAHWAIQTWNKDLKGAGQYKKMQPSELEEW 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,880
Number of Sequences: 37544
Number of extensions: 330739
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)