Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3573
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...   201   7e-53
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...   120   2e-28
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    49   8e-07
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    38   0.002
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    31   0.13 
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   2.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   5.0  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    26   6.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   8.7  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score =  201 bits (491), Expect = 7e-53
 Identities = 84/156 (53%), Positives = 117/156 (75%)
 Frame = +3

Query: 195 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLL 374
           + +++++R+D+++++  +   PW+ DP FF+ +KISA+ALLKM+ H   G  LEVMG + 
Sbjct: 3   NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62

Query: 375 GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPG 554
           GKV+  ++I++DSFALPVEGTETRVNA  +A EY   Y    K V RHEN IGWYHSHP 
Sbjct: 63  GKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPN 122

Query: 555 YGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISA 662
           YGCWLSG+DV TQ  NQ +Q+PFVA+V+DP R++ +
Sbjct: 123 YGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLES 158


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score =  120 bits (289), Expect = 2e-28
 Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 1/128 (0%)
 Frame = +3

Query: 291 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 467
           + IS+LALLKM+ H R G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89

Query: 468 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 647
           ++     ++  KQ GR E  +GWYHSHPG+GCWLS +D++TQ   +      VA+V+DP+
Sbjct: 90  FQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPI 147

Query: 648 RTISAGKV 671
           +++  GKV
Sbjct: 148 QSVK-GKV 154


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = +3

Query: 285 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 455
           + + +  L LL  V  + RS  G    V+G+LLG+ + + + V +S+A+P E  E   + 
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 456 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 551
               + +M +  E  K++  +E  +GWYH+ P
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHTGP 106


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = +3

Query: 351 LEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA--QAQAYEYMTAYIEAAKQVGRHEN 524
           LE  G+L GK+  N   +        E T        +A  +E+   +         +  
Sbjct: 285 LETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKH---------NLL 335

Query: 525 AIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTIS 659
            +GW H+HP   C++S +D+ T    Q      +AIV+ P +  S
Sbjct: 336 TLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTS 380


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 480 TAYIEAAKQVGRHENAIGWYHSHPG-YGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTI 656
           T  +E   Q+G HE   G Y  + G +  +  G+D++T+        P +++ ID  + I
Sbjct: 54  TRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEGKAI 113

Query: 657 SAGK 668
           +  K
Sbjct: 114 APKK 117


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 262 HGLAARISCCCFLSYRYISSTFETVSMLFAITQVF*AIDACESALVD 122
           H  A +   C   SYR ++  +E + +L     +F    +C   +VD
Sbjct: 588 HSKAVQQEFCSLYSYRIVNLLWEILGILLTPVLLFFTFPSCSQDIVD 634


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 26   FNQYSFEIKKNSHCIVIQLNLYSEYYFITHNGI-NKCRFTSIYC 154
            F  + F   K  +C++ +LN + E     +NG+ +    TSI C
Sbjct: 1296 FISHDFTQNKAKNCVLSELNFFLELLHSLNNGLPSDSHKTSIVC 1339


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 DILLLFLVVSIYIINVRNGFNVIRHHPSFLSNR 147
           D+L+LF  V+I +INV   +  + HH +  S R
Sbjct: 188 DLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLR 220


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 208 IYIDTTRNNNRISSPLNH 261
           IY+D T +N +I+ PL H
Sbjct: 90  IYVDPTSSNKKITIPLGH 107


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 260 WFSGEDILLLFLVVSIYIINVRNGFNVIRH 171
           W     I+ +F ++ IY+I   NGF  I +
Sbjct: 77  WAKRWSIVFMFCLMQIYVIWTSNGFGSIEY 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,910
Number of Sequences: 5004
Number of extensions: 77911
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)