Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3573
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 235 2e-62
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 128 6e-30
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 128 6e-30
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 42 4e-04
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 41 0.001
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 39 0.005
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.005
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 33 0.18
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 30 2.2
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090... 29 5.2
11_06_0372 + 22781438-22781977 28 9.1
10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705 28 9.1
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 235 bits (576), Expect = 2e-62
Identities = 117/203 (57%), Positives = 141/203 (69%), Gaps = 29/203 (14%)
Frame = +3
Query: 150 IAQKTWVMANNIETVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 317
+A++TW + NNI ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 318 KMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEA 497
KMV+HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA AYEYM Y
Sbjct: 61 KMVVHARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYMVEYSTI 120
Query: 498 AKQVGRH-------------------------ENAIGWYHSHPGYGCWLSGIDVSTQMLN 602
KQ+G H EN +GWYHSHPGYGCWLSGIDVSTQMLN
Sbjct: 121 NKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLN 180
Query: 603 QNFQEPFVAIVIDPVRTISAGKV 671
Q FQEPF+A+VIDP RT+SAGKV
Sbjct: 181 QQFQEPFLAVVIDPTRTVSAGKV 203
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1
Query: 667 KFGLGAFRTYPKGYKPANEEPSEYQTI 747
K +GAFRTYPK YKP +E SEYQTI
Sbjct: 202 KVEIGAFRTYPKDYKPPDEPVSEYQTI 228
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 128 bits (308), Expect = 6e-30
Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Frame = +3
Query: 285 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 461
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 462 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 641
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 642 PVRTISAGKV 671
P++++ GKV
Sbjct: 145 PIQSVK-GKV 153
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 128 bits (308), Expect = 6e-30
Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Frame = +3
Query: 285 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 461
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 462 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVID 641
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 642 PVRTISAGKV 671
P++++ GKV
Sbjct: 145 PIQSVK-GKV 153
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 531 GWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVI---DPVRTISAGK 668
GW H+HP C+LS ID+ TQ Q VAIVI DP R + G+
Sbjct: 429 GWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGR 477
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/121 (23%), Positives = 50/121 (41%)
Frame = +3
Query: 291 IKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAY 470
+ ++ + V A + LE G+L G + T V + +P + + + ++ +
Sbjct: 362 VPVTLMECFLRVAEANTANNLETCGILAGTLKKRTFYVT-TLIIPKQRSTSDSHSTQKCQ 420
Query: 471 EYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVR 650
I + G +GW H+HP C+LS ID+ Q +AIV+ P
Sbjct: 421 ATNEEEIFEVQDKGSLFT-LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTD 479
Query: 651 T 653
T
Sbjct: 480 T 480
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +3
Query: 348 TLEVMGLLLG--KVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHE 521
+LE G++ G +VD + + + + + T + +A E + ++ +Q+G
Sbjct: 296 SLETCGIIAGTLRVDMDVKYFIATDLIIPKQESTSYSREATNEEEI---LDIFEQLGSPS 352
Query: 522 NAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 644
+ +GW H+HP C++S +D+ NQ AIV+ P
Sbjct: 353 H-LGWIHTHPTQECFMSSVDLHNHYSNQKDLREAFAIVVAP 392
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 425
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 519 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRT 653
E +GWY S+PG+ S D + + + +DPV++
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKS 207
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 528 IGWYHSHPGYGCWLSGIDVSTQMLNQN 608
+GW H+HP C+LS ID+ QN
Sbjct: 387 LGWIHTHPTQSCFLSSIDLHNHYSYQN 413
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 123 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKIS 302
STS+ Q + + W+ + + ++NV DI + +D A +K+ H D+ ++
Sbjct: 88 STSSLPQVATCKNNWLAVTSEKWLANVGDIDSVHNQAMRDCDAL--LKKEQHI--DVSLN 143
Query: 303 ALA-LLKMVMHARSGGTLEVMGLLLGKV 383
+ + K+ + R G+++V LLL +V
Sbjct: 144 SQSNAEKIAYYTRLNGSIDVTRLLLKQV 171
>01_07_0106 -
41107673-41107942,41108362-41108574,41108877-41109041,
41109431-41109649,41110205-41110324,41110427-41110489,
41111034-41111606,41111691-41111858,41112414-41112495,
41112667-41112743,41113031-41113101,41114315-41114363
Length = 689
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 11 QINFRFNQYSFEIKKNSHCIVIQLNLYSEY 100
+I+ R Q++FE+KK S C V +N +EY
Sbjct: 7 EIHPRELQFTFEVKKQSSCTVHLVNKSNEY 36
>11_06_0372 + 22781438-22781977
Length = 179
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 114 TMASTSADSQASIAQKTWVMANNIETVSNVDDI 212
T +TSA + +A+ W++A E +N DDI
Sbjct: 31 TTTTTSAMAPLPLAEVKWILAQKREPYTNPDDI 63
>10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705
Length = 320
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 537 TNQWHFHDVQPVWQP---QCKQSCIHMLVLEHSHVFRSPQ 427
+++WH H QP W+P K S + LE + R+P+
Sbjct: 12 SSRWHPHRCQPYWRPPTWDMKGSNVCFTALEQILISRAPR 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,025,168
Number of Sequences: 37544
Number of extensions: 503948
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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