Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3573
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...   270   9e-73
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...   131   4e-31
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...   125   3e-29
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    39   0.003
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    28   8.1  
U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine rece...    28   8.1  

>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score =  270 bits (661), Expect = 9e-73
 Identities = 121/176 (68%), Positives = 143/176 (81%)
 Frame = +3

Query: 144 ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 323
           +S+ Q+ W   NN++   NVD I+ Y+ KQQ +I  AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10  SSVPQRNWEKENNVQ---NVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66

Query: 324 VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 503
            MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E   
Sbjct: 67  TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126

Query: 504 QVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKV 671
             GR E  +GWYHSHPGYGCWLSGIDVSTQ LNQ FQEP+VAIVIDP+RT+SAGKV
Sbjct: 127 TEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKV 182



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +1

Query: 667 KFGLGAFRTYPKGYKPANEEPSEYQTI 747
           K  +GAFRTYP+GY+P ++ PSEYQ+I
Sbjct: 181 KVDIGAFRTYPEGYRPPDDVPSEYQSI 207


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score =  131 bits (317), Expect = 4e-31
 Identities = 66/134 (49%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
 Frame = +3

Query: 273 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 449
           P   + + IS+LALLKM+ HARSG  LEVMGL+LG  VD  T+ V D FA+P  GT   V
Sbjct: 23  PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82

Query: 450 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVA 629
            +    Y+  T +++  K VGR EN +GWYHSHPG+GCWLS +DV+TQ   +      VA
Sbjct: 83  ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140

Query: 630 IVIDPVRTISAGKV 671
           +V+DP++++  GKV
Sbjct: 141 VVVDPIQSVK-GKV 153


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score =  125 bits (302), Expect = 3e-29
 Identities = 60/128 (46%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
 Frame = +3

Query: 291 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 467
           + IS+LALLKM+ H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 33  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92

Query: 468 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 647
           ++     ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP+
Sbjct: 93  FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150

Query: 648 RTISAGKV 671
           +++  GKV
Sbjct: 151 QSVK-GKV 157


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +3

Query: 291 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 455
           + +  L LL +V H    +++     V+G+LLG +  + T+ + +SFA+P +  +   + 
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 456 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 551
                +Y+ +      +V   E  +GWYH+ P
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +3

Query: 333 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 512
           A++ G  + MG L+G  +  ++ V + FA+P   +   +    Q  + M   I A K+  
Sbjct: 29  AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85

Query: 513 RHENAIGWY 539
            +E  +GW+
Sbjct: 86  PNEQPVGWF 94


>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 559 VVGCQVLMCQHKCSTRTSRSLLWPSSLIQ*EQSLLVKFG 675
           VV  Q+LM Q   ST   +  LW ++L++  Q L  +FG
Sbjct: 364 VVEDQILMTQSNLSTTVDKDKLWDNALMKIRQHLDARFG 402


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 63  IVL*FSLTYILNIILSHTMASTSADSQASIAQKTWVMANNIETVSNVDDI 212
           +VL  + T ++ +++S+ +   S  S     Q T  +ANNI  + N D I
Sbjct: 10  VVLLLAATVVVTVLISNYVHQLSMSSGTPTIQNTVSIANNIRQLINTDKI 59


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -2

Query: 359 DLQCATRSCMHHHLQQCKS*----YLYVFEEMWVFLPW 258
           D  C+ R  MH+H +Q +      +LYVF E+  FLPW
Sbjct: 197 DQYCSPR--MHNHEEQGRVDDLWSWLYVFVELRAFLPW 232


>U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein222 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 335 CMHHHLQQCKS*YLYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRN 192
           C+H  ++     YL V E+ W FL W   E +L+   +  I+I  +++
Sbjct: 180 CLHPDVRNAPL-YLVV-EDRWKFLSWTVAEALLVALTLQGIFIFIIKS 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,198,295
Number of Sequences: 27780
Number of extensions: 449165
Number of successful extensions: 1204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)