Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3566
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 121  PAKGKKRK-ANTNLVTSEPKNVKQNSLVNSDNKNSILD 231
            P + KK+K    N + + P N  Q  +V SDNK+S+ D
Sbjct: 1535 PRQSKKQKDVMINKIIAMPSNSNQIIVVESDNKSSVWD 1572


>Z49913-5|CAA90146.1|  404|Caenorhabditis elegans Hypothetical
           protein ZK938.7 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 165 CY*VCICFTFFTFSRHLF 112
           C+ VC C   FTF RH F
Sbjct: 189 CFLVCYCVVVFTFMRHEF 206


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 399 VLPRIVKFFYVCVIFSVIFVCGSCQIRL 316
           VLP+   +  +CVIF++I V  +C+I L
Sbjct: 120 VLPKKNIWIVICVIFAIISVSVACEIYL 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,703
Number of Sequences: 27780
Number of extensions: 179846
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)