Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3563
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.0  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    26   6.6  

>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 273 LRSKKLLFIHTHTYTLMTSYLRHRIHSLFRFGRSFRCFGLVQTL 404
           L S    F+H  T  + +S+ RH IH +  F  S   F +  T+
Sbjct: 38  LGSSTTNFVHDSTIGVKSSWSRHLIHGINIFSFSISLFLIFLTI 81


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 291 LFIHTHTYTLMTSYLRHRIHSLFRFGRSFRCFGLVQT---LKAVVDTASSTCSNRWSF 455
           L I    ++++ S   H ++  F FG SF CFG++ T   + +++      CS  +++
Sbjct: 499 LVILIELFSILDSLWFHPLY--FMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNW 554


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 490 IEHHFKGQKILSNDHRLLHVDDAVSTTAFKVCTKPKHLNDLPK 362
           + HHF+ +     D RL+H+   +  TA  V  K     D+ K
Sbjct: 224 VAHHFRSKNYEIKDSRLIHI--PLEETAIDVPAKDSVREDIQK 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,240
Number of Sequences: 5004
Number of extensions: 66728
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)