Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3563
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 31 0.98
07_03_0305 - 16475127-16476017,16476058-16478067 30 1.7
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 29 3.0
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 29 3.9
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 29 5.2
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 29 5.2
07_01_0818 - 6548171-6548479,6550023-6550175,6550569-6550704,655... 28 6.9
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 28 6.9
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 28 9.1
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 467 LAFEMMLYSHTIRS*VCRSIKLTADYLYFSVHSKNKRNGIVTNPAMRLVANVR-NGLGKR 643
+ F ++H IRS + +IK+ + + FSV + KR I ++ VA + G+ KR
Sbjct: 761 IQFAYRRFAHRIRSRISAAIKIQSHWRCFSVRIRFKRQ-IQNITTIQAVARLLVTGIWKR 819
Query: 644 MRIMILTHI 670
I+I H+
Sbjct: 820 SVIVIQAHV 828
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = -3
Query: 697 KIREKRFYLDVR*DHYSHALTESIPDVRHQSHRWIRDDSISFVLAVNRKIKIVRREFDGA 518
K++E + YLD+ + +S A+ S+ ++ SHR +DS+S+++ +
Sbjct: 673 KMKELQ-YLDLAYNSFSGAIPWSLVNLTAMSHRPADNDSLSYIVYYGWSLSTSNVRVIML 731
Query: 517 TDLGPY 500
+LGPY
Sbjct: 732 ANLGPY 737
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 487 LFPHDKVLSLSLHQTHGGLSLFFCSQQEQKKWNRHESSDEIG 612
+ P+D++L+L++ + H S++ QQE + NR + EIG
Sbjct: 323 VIPNDEILALAVDEFHSSQSVY---QQELQDLNRWDDHGEIG 361
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 527 KLTADYLYFSVHSKNKRNGIVTNPA 601
K D + FS+H +NK G TNPA
Sbjct: 111 KTVIDEMAFSIHGENKHFGTPTNPA 135
>01_07_0383 -
43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 141 NCVSQSDKVLVSKSTSFGVVLKQKLRRANSFGLMPHSNLLKPTRLRSKKLLFIHTHTYTL 320
NCV + S++TS VL L A S M N L+SK + I + TY+L
Sbjct: 275 NCVRDNSS---SENTSLSKVLSGTLSSAESAFSM---NKYFLDFLKSKSAI-IRSATYSL 327
Query: 321 MTSYLRHRIH 350
+ SY++H H
Sbjct: 328 LASYIKHVSH 337
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 28 ADLGRMVVATSARSQDCPLPVRVESSTFCDFLGSFGTSIASLKATRS 168
A+ GRM V T++ D PL VR +S+ D + T SL++ +S
Sbjct: 642 ANEGRMAVITTSDDYDSPLAVR-DSNDLADSMTMRSTKSESLRSLQS 687
>07_01_0818 -
6548171-6548479,6550023-6550175,6550569-6550704,
6550832-6551050,6551152-6551530,6551794-6552055,
6554132-6554200
Length = 508
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 610 QSHRWIRDDSISFVLAVNRKIKIVRREFDGATDLGPY--RVGIEHHFKGQ--KILSNDHR 443
+S W+ + V V R +++ + + +L R+GI+HHF+ Q IL N HR
Sbjct: 24 ESDEWMEERVDQLVEEVGRMLEVCKDDVVKQMNLVDVLQRLGIDHHFEEQIDTILKNIHR 83
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 6 LRLKRVRGRLRQDGSSY----QCALTRLPTTSKSGIKHFLRFFGIIW 134
LR + GRLR+ G +CAL RL +T+ K F FGI+W
Sbjct: 83 LRWPLLAGRLRRVGCLPVLVDKCALRRLRSTTFLHTKTFTPDFGILW 129
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 381 CFGLVQTLKAVVD--TASSTCSNRWSFDRIFW 470
C +Q L+A ++ TA SNR+ +D IFW
Sbjct: 45 CGNFMQLLQAPIESETALYLTSNRFEYDNIFW 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,131
Number of Sequences: 37544
Number of extensions: 427171
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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