Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3561
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.23
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 2.2
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 2.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 3.8
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 3.8
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 5.0
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 24 6.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 24 6.7
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 8.8
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 24 8.8
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 24 8.8
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 29.1 bits (62), Expect = 0.23
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 94 QSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGAF 249
QSP L + + + L E N N+F +D +E+ R L S+P F
Sbjct: 589 QSPAFTLLRDILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSLF 640
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 2.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 314 FDFXLSSLKALTLDINSRPATWNAP-GMLFKARGLSTGSYSETNSF 180
F F L L + LD+ R TW+A + G +T S++ +F
Sbjct: 571 FRFELGLLDFIDLDLTERLGTWSASLSTILLVLGKTTPSFTTLGAF 616
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 2.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 199 IQKRIRSMYSTYFHEAFPTI-EVWQKALEII-SLKGFVVY 86
+ KRI S+ YF EA T E W + +II +L+G Y
Sbjct: 510 VSKRILSLAPAYFREALSTSDEEWSQHRKIIDTLEGSKKY 549
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 335 QWLCFCPFDFXLSSLKALTLDINSRPATWNAPGMLFKARGLST 207
Q F F L +L+ + LDI + W G+ RG+ST
Sbjct: 613 QLTTFSDFQLKLKTLQCV-LDILQSLSNWAESGLYLSRRGVST 654
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 3.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +1
Query: 118 PTPSAIPQLWE--KLHENMSNTWNEFVS 195
P IP W + H N+ + WNEF+S
Sbjct: 247 PIKIGIPIDWNVSETHPNVLDKWNEFIS 274
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 5.0
Identities = 15/73 (20%), Positives = 29/73 (39%)
Frame = +1
Query: 154 LHENMSNTWNEFVSEYDPVESPRALKSMPGAFHVAGLLLISSVSALRELNXKSNGQKQSH 333
+H+++ ++ YD + + H AG + + + E K +KQ H
Sbjct: 297 VHKHVGLVTLRSINAYDSSDPAWGYEDGDLCVHFAGCFVFQTCAQNFEKYGKIITEKQGH 356
Query: 334 WWVRSQELLYLQQ 372
W E Y++Q
Sbjct: 357 DWFDPSEKEYIEQ 369
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 133 IPQLWEKLHENMSNTW 180
+ QLW+KL M N W
Sbjct: 349 VSQLWDKLERWMENRW 364
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.2 bits (50), Expect = 6.7
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +1
Query: 40 LLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVS-------E 198
++V++ K TQ LTKL +++ WE + + W +++ +
Sbjct: 1082 VVVKEFKPRPSTKPFSTQDEVLTKLPVDQASLKAAWESSQKLTRDDWQDWIRRISIELLK 1141
Query: 199 YDPVESPRALKSMPGAFH--VAGLLLISSVSALREL 300
P + R+ ++ G +H L +S +S EL
Sbjct: 1142 ESPSSALRSCSTLAGIYHPLARDLFNVSFLSCWDEL 1177
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 23.8 bits (49), Expect = 8.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 78 SRIYTTKPFNEIISNAFCH 134
++ TT +N+II+N F H
Sbjct: 158 NKFRTTSKYNQIINNIFAH 176
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 5 YPARSLLTSEIYYWSSN*NKQIEWLKN 85
+PA +++ I+ S N++I+W KN
Sbjct: 551 FPAIAIIEQGIFTRSGKRNRKIKWRKN 577
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 184 RSMYSTYFHEAFPTIEVWQKALEIISLK 101
+S+ YF +A TI QKALE LK
Sbjct: 187 KSIVWNYFEQAETTIADLQKALEAKDLK 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.128 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,903
Number of Sequences: 5004
Number of extensions: 32147
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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