Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3561
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 29 1.5
01_06_1013 + 33808663-33809856 28 2.7
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 28 2.7
06_03_0978 - 26494069-26495223 27 4.7
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 4.7
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 27 4.7
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 27 6.2
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 26 8.2
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 26 8.2
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586... 26 8.2
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 VEQLKQTDRMAQEYTQQS-PLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVES 216
V +LK D+ E Q S P+ +LF T +K HE S + + + +DP S
Sbjct: 437 VYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETSTMHSSYSNLFDPAPS 494
>01_06_1013 + 33808663-33809856
Length = 397
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 256 RRGTHPACFSKHEGFRRGRIQKRI 185
R T P CFS E +R R++ R+
Sbjct: 72 RTNTRPGCFSPSEAWRSNRVKTRV 95
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 97 SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPV--ESPRALKSMPGAFHVAGLLL 270
+P +K TP P + HE+ NT N F + + P ++ V L
Sbjct: 205 TPESKEIRTPGCAPDFRDDFHEDYGNTLNYFNKKKPHILTPPPDPIEDEYLGVTVGELTT 264
Query: 271 ISSVSALRELNXKSNGQKQSHWWVRSQEL 357
I S L+E S G + H +S L
Sbjct: 265 IMSNEWLKEKEFSSKGVQNIHHEEKSNML 293
>06_03_0978 - 26494069-26495223
Length = 384
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 133 IPQLWEKLHENMSNTWNEFVSEYDPVESPRA 225
+P L+ +L +S+TWN F++ P + P A
Sbjct: 47 LPFLYHRLFRTVSSTWNRFLT-VSPAKFPSA 76
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 240 RHAFQST-RAFDGVVFRNEFVPCIRHIFMKLFPQ 142
R +F+ RAFDG V + F+PC+ + M FPQ
Sbjct: 812 RDSFEDELRAFDGGV--DGFLPCVWDVEMSNFPQ 843
>06_01_0844 -
6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 106 TKLFPTPSAIPQLWEKLHENMSN 174
+K+F T + +P LWE+L ++ N
Sbjct: 174 SKIFSTENVVPVLWEQLKVSLKN 196
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 251 WNAPGMLFKARGLSTGSYSETNSFHVFDIFS*SFSHN*GMAEGV 120
W+ P M + L G +SE FHVF S N GV
Sbjct: 213 WSNPNMSWDKAQLWVGYFSEKGFFHVFPYSSVGLLQNGRSCAGV 256
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 4 LSGAKSINIGDLLLVEQLKQTDRMAQEYTQQSPLTKL--FPTPSAIPQLWEKLHE 162
L + + D++L E + + ++ Q Y ++PL F P + ++LHE
Sbjct: 76 LRALRILKCADVILSEDTRHSGKLLQHYNIKTPLLSFHKFNEREREPNILKRLHE 130
>03_03_0274 -
16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 157 HENMSNTWNEFVSEYDPVESPRALKSMPGAFHVAGLLLISSV 282
H+N WN + YD + + L++ G ++G LL +
Sbjct: 524 HKNCRTIWNRLLMGYDILPASSPLRTALGYVQLSGNLLSGQI 565
>03_02_0141 +
5867591-5867736,5867926-5868010,5868096-5868137,
5868255-5868423,5868792-5868844,5869022-5869240,
5869507-5869553,5869732-5869786
Length = 271
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 97 SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFV---SEYDPVESPRALKSMPG 243
+P + P+P+++ Q N+ N W+ + + Y P LK MPG
Sbjct: 13 APSSSPSPSPASLRQWRPAAQRNLRNQWSRLLAAKARYMPGMDLGVLKDMPG 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,617
Number of Sequences: 37544
Number of extensions: 192739
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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