Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3561
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.054
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   0.88 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   0.88 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   3.5  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   3.5  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   3.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.054
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 97   SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGA 246
            +P T +   P  IP+     HEN   T N+      P     ++K+ PG+
Sbjct: 851  TPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGS 900


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 106 LKGFVVYILEPFYLFVSIARPVINLR 29
           +K  +VY+ + FYLF+ + R  + LR
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLR 553


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 106 LKGFVVYILEPFYLFVSIARPVINLR 29
           +K  +VY+ + FYLF+ + R  + LR
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLR 553


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 310 ISC*VLSKRSRWISI 266
           ++C VLS +S+W+SI
Sbjct: 62  VTCDVLSWQSKWLSI 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  AKSINIGDLLLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIP 138
           A+S+  G  +  EQLK+TD +   Y  +   +   P  S  P
Sbjct: 707 ARSLMEGPRMTAEQLKRTD-IIHNYIMRGEASPRSPNASPSP 747


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 154 LHENMSNTWNEFVSEYDP 207
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 154 LHENMSNTWNEFVSEYDP 207
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 154 LHENMSNTWNEFVSEYDP 207
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 163 NMSNTWNEFVSEYDPV 210
           N  N+W+  V  Y+PV
Sbjct: 151 NKINSWDNVVVAYEPV 166


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 248 NAPGMLFKARGLSTGSYSETNS 183
           ++PG+L +A    +G+ S TNS
Sbjct: 916 SSPGLLERASPAFSGTSSPTNS 937


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 278 LDINSRPATWNA 243
           +D N++P TW A
Sbjct: 294 IDANTKPCTWAA 305


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 278 LDINSRPATWNA 243
           +D N++P TW A
Sbjct: 294 IDANTKPCTWAA 305


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 278 LDINSRPATWNA 243
           +D N++P TW A
Sbjct: 294 IDANTKPCTWAA 305


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 53  N*NKQIEWLKNIHNKAL*RNY 115
           N N  ++WL  I+N+   R Y
Sbjct: 683 NCNCSMDWLPGINNQTSTREY 703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,389
Number of Sequences: 438
Number of extensions: 2130
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)