Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3560
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    33   0.044
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.9  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   3.9  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   8.9  

>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 167 YGTNEPHTKPHHSLRHRLANNTTSCRDSIKLGKSFIYNIY 48
           Y TNE ++K  +SL+HR  +   + RDSI   K  +Y  Y
Sbjct: 46  YNTNETYSKMDNSLQHRGVSKIEAVRDSIYQNKRGMYLAY 85


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 634 NSLTGLSAKEGKKVEALWGERQE 566
           N L+GLS K  ++VEA+W    E
Sbjct: 50  NELSGLSEKSRQRVEAVWAAFSE 72


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 161 FRINNLLLNSKKSKCIEFILKCIKSSFN 244
           +R +N  L   K  C  FIL C +  FN
Sbjct: 281 YRESNKRLQESKESCARFILDCDRKYFN 308


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 594 TFFPSLAESPVRLFQRNFNYSRII 665
           T+F S AE  V  F RN N+SR I
Sbjct: 213 TYFHSKAEKKVTEFLRNRNWSRSI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,986
Number of Sequences: 5004
Number of extensions: 48968
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)