Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3556
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   7.3  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.3  

>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 610 VYLYINFKFIYRFHFAYF 557
           VY+YINF   YR  F++F
Sbjct: 115 VYVYINFSMGYRGFFSWF 132


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 640 VSAILLRTATVYLYINFKFIYRFHFAYFTFNTLRQRHFKIRYKTKIISYYNYVTELHM-- 467
           V +ILL T  VY+  N+K  +   F  F   TL      I++   +  +++ +++ H+  
Sbjct: 352 VVSILLNTILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQF-VALGVFHSKISDPHIGG 410

Query: 466 TQFTII 449
           T  TI+
Sbjct: 411 TYMTIL 416


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 655 FFFLFVSAILLRTATVYLYINFKFIYRFHFAYFTFNTLRQRHF 527
           FF  F  +  L T+   +YIN KFI +     F     R+R F
Sbjct: 219 FFLRFFESPSLNTSVAKVYINQKFIRKL-LVLFDSEDPRERDF 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,097
Number of Sequences: 5004
Number of extensions: 46748
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)