Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3556
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1179 - 31512592-31515126                                         29   4.3  
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234...    28   5.7  
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595           28   7.6  
07_01_0691 - 5224260-5224277,5224663-5224733,5224774-5224953,522...    28   7.6  
06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274...    28   7.6  

>04_04_1179 - 31512592-31515126
          Length = 844

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 607 YLYINFKFIYRFHFAYFTFNTLRQRHFKIRYKTK 506
           Y++ NF ++ R HF    ++   QR FKI    K
Sbjct: 303 YVHPNFDYLVRLHFCELFYDKPNQRVFKIYINNK 336


>12_02_0706 +
           22319293-22319803,22321625-22321766,22322223-22323451,
           22323471-22323916,22324001-22324510
          Length = 945

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 505 IISYYNYVTELHMTQFT--IITHYNYHYWNTIY 413
           ++SYY + ++   ++ T  +   YN+H+W   Y
Sbjct: 360 VLSYYRFSSDFWQSRLTNNVAKAYNFHHWRHFY 392


>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
          Length = 904

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 353 KYVRTITLSNCWCCCCSFFDVNRIPIMIIIVC 448
           K  R I L   WCCCC     +R    I  +C
Sbjct: 390 KIKRKIKLPRWWCCCCFTVTGSRFTDYIYQLC 421


>07_01_0691 -
           5224260-5224277,5224663-5224733,5224774-5224953,
           5226391-5227072
          Length = 316

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 317 RYLL*MNFQLHIKYVRTITLSNCWCCCCSFFDVNRI 424
           RYL+ +  +  I+    I L  CWC C +  D +R+
Sbjct: 278 RYLIDLPHRTDIRLSEAI-LDYCWCWCATILDDDRV 312


>06_03_0117 +
           16826133-16826600,16826650-16827201,16827310-16827453,
           16827543-16827959
          Length = 526

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 582 FTGFISPTLHLIRFVNVILKYGTK 511
           F GF+ P +H +   N I+K GTK
Sbjct: 321 FLGFLVPGMHELNIGNTIIKAGTK 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,133
Number of Sequences: 37544
Number of extensions: 228104
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)