Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3556
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    29   2.9  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 580 YRFHFAYFTFNTLRQRHFKIRYKTKIISYYNYVTELHMTQFTIITHYNYHYW 425
           + +H   F      QR   +  K+ ++S Y+YV         I+T Y+  +W
Sbjct: 72  FEYHIDKFHQPLFYQRIILLETKSDVVSAYSYVANQENMNDYILTMYSVDFW 123


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 347 HIKYVRTITLSNCW 388
           HI Y+ TITL++CW
Sbjct: 169 HISYMTTITLTHCW 182


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 356 YVRTITLSNCWCCCCSFFDVNRIPIMIIIVCNNCK 460
           +   + L  CWCCC   F + R    II  C NC+
Sbjct: 99  FFAALFLFGCWCCCFLPFCL-RSCKDIIHTCPNCR 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,279
Number of Sequences: 27780
Number of extensions: 254785
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)