Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3553
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.1  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   9.0  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 319  VAQELATDNRNSISTMSELLAYSIISNTQSHYSSNLFL--HNHID 447
            ++ EL  +  N    +   + Y+I S  Q+H S N+ +  HNH++
Sbjct: 1167 LSSELLNNLLNDFDKILNFILYNIESKIQTHASFNVTITEHNHVE 1211


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 64   MFKKKTCPENNNKARIGHMVHNQFGLLTKKK 156
            MF  KT  ++NN       +H Q G+L K+K
Sbjct: 1915 MFALKTQKDSNNHREENLQLHRQLGVLQKEK 1945


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -3

Query: 226 NQNREIPW*PTNISVKCANA*SDIFFLSTNQTDYEPYDRFELYYYFPDMFFF*TLTYS*I 47
           NQN   P  P N ++KCA +   + FL   +    P      +  +   +   TLTY   
Sbjct: 504 NQNGS-PMKPANFALKCAQSAERVVFL-LQELAKSPNTPKLFFNLYSGYYALMTLTYCAT 561

Query: 46  LLKITVNTTCDF 11
           L K   N + +F
Sbjct: 562 LTKDDANKSNNF 573


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 177 VRTLEVIFFFCQQTKLIMNHMTDSSFIIIF 88
           ++ LE  F++ ++   +  H+T+ SF+ +F
Sbjct: 290 LQRLEEAFYYAEEHLKLFTHVTEISFVKLF 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,604
Number of Sequences: 5004
Number of extensions: 40286
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)