Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3553
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929...    30   1.3  
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748...    29   3.0  
06_03_0260 - 18857970-18858737,18858909-18859145                       28   5.2  
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119...    28   5.2  

>12_01_1113 -
           11888691-11888900,11891794-11892243,11892274-11892950,
           11893396-11893957,11894121-11894207
          Length = 661

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 153 FFCQQTKLIMNHMTDSSFIIIFRTCFFFKH*LIVKYCL---RSPLIRHAI 13
           F C +     +  +D  F + F+ CF + H    +YCL   RSPL+R  +
Sbjct: 179 FKCSKCLATGHSRSDCHFRVCFKACFAYGH--KARYCLAQIRSPLVRDTL 226


>05_04_0367 -
           20672776-20673550,20674097-20674320,20674626-20674843,
           20675133-20676534
          Length = 872

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 298 VIFCHRSRFFAVLETKDRSSMVKSNQNR 215
           ++ CHR +F A+LETK    + K+   R
Sbjct: 623 ILECHRKQFHAILETKSHVLIPKNGPER 650


>06_03_0260 - 18857970-18858737,18858909-18859145
          Length = 334

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 241 SMVKSNQNREIPW*PTNISVKCANA 167
           +MVK    R  PW PT + +KC+ A
Sbjct: 306 AMVKMGNIRPDPWTPTEVRIKCSVA 330


>02_01_0174 -
           1193696-1193726,1193822-1194175,1194307-1194542,
           1194629-1194741,1195963-1196161,1196427-1196513
          Length = 339

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 255 QKIEVQW*NQIRIGKSRGDRQTSP*NVRTLEVIF 154
           +++ V+W  + R G  RG+ + SP N R  + +F
Sbjct: 125 RRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLF 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,338
Number of Sequences: 37544
Number of extensions: 237546
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)