Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3553
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ...    29   2.0  
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 420 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 456


>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 384 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 420


>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 423 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 459


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 420 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 456


>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
           protein F36H2.1b protein.
          Length = 1035

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 384 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 420


>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           + +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 423 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 459


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 70  KKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
           +  T PE     RI  ++ ++ G LTK + HFK+ H+
Sbjct: 415 RSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 449


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 71  KKKHVRKIIIKLESVIWFIISLVC 142
           +  H  KI+  L+ V+W+++ ++C
Sbjct: 190 RNSHAYKIVFLLDFVLWYVLPIMC 213


>Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical
           protein F20E11.2 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/26 (30%), Positives = 20/26 (76%)
 Frame = -3

Query: 367 SLY*YYFCYQWLAPVLLIVEILKVIF 290
           S+Y ++ C+Q +  ++L+V++L ++F
Sbjct: 85  SIYVFFICFQAVIILMLVVDLLIIVF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,307
Number of Sequences: 27780
Number of extensions: 227198
Number of successful extensions: 497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)