Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3548
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    32   0.098
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    32   0.098
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   3.7  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   4.9  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.9  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   6.4  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 30/121 (24%), Positives = 49/121 (40%)
 Frame = +3

Query: 129 FCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQ 308
           FC     G+    +  K  W   E      S N +V T L+   G+LL +++  VM E  
Sbjct: 45  FCVFGASGIYLDKLVNK--WFGYEVLDLANSDNALV-TGLATSSGILLYSSWASVMQESF 101

Query: 309 ENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIYIHHREKNNGQTDLLVRNLS 488
             +E +        FD  L  +   C FF   ++  + + ++H     + QT  L  + S
Sbjct: 102 HFLEKISM------FDTFLVRVFQFCAFFFGGIVFYIFNHFLHKWLHESSQTGFLHDHFS 155

Query: 489 V 491
           V
Sbjct: 156 V 156


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 31.9 bits (69), Expect = 0.098
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +3

Query: 252 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIY 431
           FG GV+L+T F+H++      + +    ++   +D++    L  C F +  L+E L++ Y
Sbjct: 106 FGSGVILATAFIHLLAPACNKLYDPCLDDLFGGYDWAPGICLISCWFIL--LLEVLLNRY 163

Query: 432 IHHR 443
           +  R
Sbjct: 164 VEWR 167


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  HRANRQTNKMAYRHSHDHDDDTDGIV 98
           +R    T  +A    +D+DDDTDGI+
Sbjct: 291 NRLAEMTAHLAESSDYDNDDDTDGII 316


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 108 GISMVVLFCASMICG--LIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTT 281
           G+S +V++ A +I    L+      +      E +GT K   R+ M L    GG L+  T
Sbjct: 130 GLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGLAGLAGGALIGLT 189

Query: 282 FMHVMPEVQENIENLQA 332
                P V   +  L A
Sbjct: 190 GGLAAPFVAAGLGTLFA 206


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 277 VESSTPPPKESRVITTRFVDLNVPASSTESHRNFLAMI*GIRPHIMEAQKSTTM--EMPL 104
           VE   P P+E   I        +P     SH+N +A++  I  H+ E      +   +PL
Sbjct: 231 VEPDPPSPEEICCIMYTSGSTGLPKGVILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPL 290

Query: 103 ANTI 92
           A+ +
Sbjct: 291 AHIL 294


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 606 LRDCGCSLHVPYSFRVIQFRI 544
           + DC C LHV  + R++ +R+
Sbjct: 224 INDCDCGLHVCENTRILMYRL 244


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 437 MNVYVHQFFYQIHYEEAAARQ*GSQ*EIKFLENVPRLQIFNVLLDFRH 294
           +++Y+ +FF  + Y+ AA    GSQ  +K ++N     I +    ++H
Sbjct: 513 LDMYIQKFFDYVGYQTAALAACGSQSFLKRIKNSVNKSISSTTDIYQH 560


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 387 GFFIMYLIEELVHIYIHHREKNNGQ-TDL 470
           G  + Y+  +L H ++HHR   N   TDL
Sbjct: 274 GAILGYVFYDLTHYFLHHRRMPNAYLTDL 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,999
Number of Sequences: 5004
Number of extensions: 60902
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)