Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3546
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.080
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 34 0.14
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.3
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 30 2.3
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 30 2.3
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574... 29 3.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.0
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 29 4.0
06_02_0179 + 12668623-12669591 29 5.2
11_01_0352 + 2641949-2642974 28 6.9
10_02_0158 + 6011852-6012049,6012085-6012543 28 6.9
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 6.9
11_06_0291 + 22008412-22012284 28 9.2
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 28 9.2
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 28 9.2
02_04_0413 + 22681957-22682035,22682253-22682788 28 9.2
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 34.7 bits (76), Expect = 0.080
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = +3
Query: 45 PRCQARCCYPCSLP------RGPCSVPGCPSC-LP-RRPCSVPGRPSCLP 170
P C C PCS P RG C P P C LP PC +P P C P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPCPP 156
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 51 CQARCCYPCSLP-RGPCSVPGCPSCLPR 131
C C PC LP PC +P P C PR
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPR 157
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 69 YPCSLPRGPCSVPGCPSCLPR--RPCSVPGRPSC-LPHFSTP 185
YP P G C+ P C C P+ P P +P+C P +S+P
Sbjct: 113 YPPPPPCGGCATPHCCDCHPKPPPPAPAPAKPACGCPAWSSP 154
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +3
Query: 6 FFPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTP 185
F P P P P Q+ Y S P P P P+CL P P P LP+ S P
Sbjct: 561 FSPPPPPPPPPPPPLPQSN--YASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVP 618
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 72 PCSLPRGPCSVPGCPSCLPRRPC-SVPG 152
PC P PC PGC SC P C + PG
Sbjct: 94 PCPPPPPPCC-PGCNSCRPACQCAAAPG 120
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 559 DHSGFNGGRPQHRPHSRPYSHQGCARSSVL 648
D +GF G P RPH P S G R+ VL
Sbjct: 543 DRAGFVGPAPGARPHFAPGSSMGTRRAGVL 572
>03_02_0123 +
5745390-5745576,5745993-5746082,5746255-5746351,
5746446-5746584
Length = 170
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +3
Query: 33 PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPLLLG*ICLV 212
P +APRC+ RC + P G LP L +S+P+ G I
Sbjct: 12 PVTAPRCRGRCSAATAATSAPEKTAGHVGRLPLAIVPAAAASLSLVLWSSPVHAG-IMSG 70
Query: 213 PKHRPS*PAPDYP 251
K S P PD P
Sbjct: 71 FKGMESVPGPDLP 83
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 63 CCYPCSLPRGPCSVPGCPSC--LPRRPC 140
C +PC L PC + CP C L +RPC
Sbjct: 589 CSHPCPL---PCHLNDCPPCKALVKRPC 613
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 45 PRCQARCCYPCSLPRGPCSVPGCPSCLPRRPCSV 146
PRC AR P + RG +V C PRR C V
Sbjct: 138 PRC-ARLRLPVAAARGAAAVKLCRRAAPRRRCGV 170
>06_02_0179 + 12668623-12669591
Length = 322
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 448 SGDNKSQQEVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNG-GRPQHRPHSRPYSHQ 624
+GD K+++ + D G+ + +D + A+D G +G G P RP RP
Sbjct: 34 AGDVKAERSMLSPDESPGADADLGSDHPTSSAMVAAEDSGGGSGSGGPMRRPRGRPLG-- 91
Query: 625 GCARSSVLPPLI 660
+++ PP+I
Sbjct: 92 --SKNKPKPPII 101
>11_01_0352 + 2641949-2642974
Length = 341
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +1
Query: 358 SAPVAKIVAHQAEEIAYPKYEYNYSVADGHS----GDNKSQQEVRDGDVVKGSYSFHE-A 522
SA A+ +A + + Y ++YS ADG+S D + + DGD + + E +
Sbjct: 69 SAAAARRIAGEMYKTVNSVY-FDYSAADGYSCFDDDDGRVVDDDDDGDSFSTTTASEEWS 127
Query: 523 DGSIRTVEYTADDHSGFNGGRP 588
+ IR++ T+ D F+ G P
Sbjct: 128 EAVIRSLGRTSTDRFFFDPGPP 149
>10_02_0158 + 6011852-6012049,6012085-6012543
Length = 218
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 126 PRRP-CSVPGRPSCLPHFSTPLLLG*ICLVPKHRP 227
P+RP C +P RP C STP+ G + L+P P
Sbjct: 179 PKRPLCPLPKRPLCFVEASTPVGHGKV-LIPSLSP 212
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 18 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGCPSCLPRRPCSVPGRPSC 164
HC P P P C C C G C+ P P C CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +1
Query: 442 GHSGDNKSQQEVRDGDVVKGSYSFH----EADGSIRTVEYTADDHSGFNGGRPQHRPHSR 609
G G+NK +++ DGD +G EADG E D G G + PH
Sbjct: 405 GGGGENKEEKDKGDGDREEGKEENEKDKGEADGEGEQEEEMKDKEKG--GEERKEEPHHE 462
Query: 610 PYSHQ 624
H+
Sbjct: 463 KQEHK 467
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 409 PKYEYNYSVADGHSGDNKSQQEVRDGD-VVKGSYSFH-EADGSIRTVEYTADDHSGFNGG 582
PKYE ++ K +Q++R D K + H + G + ++ T H G
Sbjct: 328 PKYESSHEFQT-----KKKRQQMRQADEAAKRQKTQHPQPHGRLPPIQQTGQPHPQIRPG 382
Query: 583 RPQHRPHS 606
+P + PH+
Sbjct: 383 QPMNNPHA 390
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 81 LPRGPCSVPGCPSCLPRRPCSVPGRPSCLPHFSTPL 188
+PR PC P P P P ++ P STPL
Sbjct: 35 IPRRPCPPPVRPPDTPAMPPALTSNPPSFRPLSTPL 70
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +3
Query: 21 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGCP----SCLPRRPCSVP 149
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,359
Number of Sequences: 37544
Number of extensions: 283204
Number of successful extensions: 921
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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